RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RCL1Q9Y2P8 373 aaKnown RBP11.34□□□□□ -0.59
SKA1-202ENST00000398452 COL6A5A8TX70 2615 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 A6NDX4 124 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 K7EPK0 472 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 CA2P00918 260 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 IGHV4-59P01825 116 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 C1QBP02746 253 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 OPN1MWP04001 364 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 IL6RP08887 468 aaPredicted RBP11.33□□□□□ -0.6
SKA1-202ENST00000398452 OPN1MW2P0DN77 364 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 OPN1MW3P0DN78 364 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 ERHP84090 104 aaKnown RBP11.33□□□□□ -0.6
SKA1-202ENST00000398452 C9orf152Q5JTZ5 239 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 FAM71E2Q8N5Q1 922 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 TMEM86BQ8N661 226 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 DTD1Q8TEA8 209 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 WDR89Q96FK6 387 aaPredicted RBP11.33□□□□□ -0.6
SKA1-202ENST00000398452 JMJD8Q96S16 334 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 RBKSQ9H477 322 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 VPREB3Q9UKI3 123 aa11.33□□□□□ -0.6
SKA1-202ENST00000398452 TEX50A0A1B0GTY4 177 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 SMLR1H3BR10 107 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 HOXA3O43365 443 aaPredicted RBP11.32□□□□□ -0.6
SKA1-202ENST00000398452 CHST1O43916 411 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 DEDDO75618 318 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 CRYGBP07316 175 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 IAPPP10997 89 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 CAV2P51636 162 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 PRCDQ00LT1 54 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 IL15RAQ13261 267 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 FXYD3Q14802 87 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 ARSJQ5FYB0 599 aaPredicted RBP11.32□□□□□ -0.6
SKA1-202ENST00000398452 HSD17B13Q7Z5P4 300 aaPredicted RBP11.32□□□□□ -0.6
SKA1-202ENST00000398452 Q8N9W7 124 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 PRDM13Q9H4Q3 707 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 MBD2Q9UBB5 411 aa11.32□□□□□ -0.6
SKA1-202ENST00000398452 PAIP2BQ9ULR5 123 aaKnown RBP11.32□□□□□ -0.6
SKA1-202ENST00000398452 KCNAB3O43448 404 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 HLA-DRB1P01911 266 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 SLC25A4P12235 298 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 SNCAP37840 140 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 COMPP49747 757 aaPredicted RBP11.31□□□□□ -0.6
SKA1-202ENST00000398452 AARDQ4LEZ3 155 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 SPINK9Q5DT21 86 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 ZNF562Q6V9R5 426 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 ZNF546Q86UE3 836 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 NOXA1Q86UR1 476 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 GRPEL2Q8TAA5 225 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 PIFOQ8TCI5 191 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 ARPC1AQ92747 370 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 ZNF48Q96MX3 618 aaPredicted RBP11.31□□□□□ -0.6
SKA1-202ENST00000398452 SLC25A31Q9H0C2 315 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 TPSG1Q9NRR2 321 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 PLSCR3Q9NRY6 295 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 PSENENQ9NZ42 101 aa11.31□□□□□ -0.6
SKA1-202ENST00000398452 SCAF4O95104 1147 aaKnown RBP11.3□□□□□ -0.6
SKA1-202ENST00000398452 IFNA10P01566 189 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 C4BPBP20851 252 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 P2RY1P47900 373 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 EIF2B2P49770 351 aaKnown RBP11.3□□□□□ -0.6
SKA1-202ENST00000398452 SUB1P53999 127 aaKnown RBP eCLIP11.3□□□□□ -0.6
SKA1-202ENST00000398452 TAS2R30P59541 319 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 RAB11AP62491 216 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 PJVKQ0ZLH3 352 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 STX12Q86Y82 276 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 C5orf56Q8N8D9 126 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 SRSF12Q8WXF0 261 aaKnown RBP11.3□□□□□ -0.6
SKA1-202ENST00000398452 SRSF8Q9BRL6 282 aaKnown RBP11.3□□□□□ -0.6
SKA1-202ENST00000398452 NPFFR1Q9GZQ6 430 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 STRAPQ9Y3F4 350 aaKnown RBP11.3□□□□□ -0.6
SKA1-202ENST00000398452 WSB1Q9Y6I7 421 aa11.3□□□□□ -0.6
SKA1-202ENST00000398452 TRAV14DV4A0A0A6YYC5 116 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 ARPC5O15511 151 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 CYB5BO43169 146 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 CRYBA1P05813 215 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 CX3CL1P78423 397 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 TMEM267Q0VDI3 215 aaPredicted RBP11.29□□□□□ -0.6
SKA1-202ENST00000398452 PDLIM3Q53GG5 364 aaPredicted RBP11.29□□□□□ -0.6
SKA1-202ENST00000398452 SPANXN5Q5MJ07 72 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 SMIM8Q96KF7 97 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 PARP11Q9NR21 331 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 NDUFA4L2Q9NRX3 87 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 OR5AC2Q9NZP5 309 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 U3KQ87 197 aa11.29□□□□□ -0.6
SKA1-202ENST00000398452 MSGN1A6NI15 193 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 HMSDA8MTL9 139 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 TRIM77I1YAP6 450 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 FCN1O00602 326 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 TSC22D2O75157 780 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 TSPAN9O75954 239 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 OR8U8P0C7N1 319 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 MYOD1P15172 320 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 HTR2BP41595 481 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 ATP5IP56385 69 aaPredicted RBP11.28□□□□□ -0.6
SKA1-202ENST00000398452 CD300CQ08708 224 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 Q5BKY6 102 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 C10orf55Q5SWW7 151 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 TMEM65Q6PI78 240 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 SLC35E3Q7Z769 313 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 OR2C3Q8N628 320 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms