RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FAM216BQ8N7L0 139 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 SMIM3Q9BZL3 60 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 DMRT1Q9Y5R6 373 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 SLC25A15Q9Y619 301 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 IGKV1OR2-108A0A075B7D4 117 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 APCSP02743 223 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 HCCSP53701 268 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 SCAND1P57086 179 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 PRSS48Q7RTY5 328 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 SIAH3Q8IW03 269 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 Q8NA96 180 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 ATP6V0E2Q8NHE4 81 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 SRSF12Q8WXF0 261 aaKnown RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 SMIM14Q96QK8 99 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 TMEM204Q9BSN7 226 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 MYH2Q9UKX2 1941 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 CSPG4Q6UVK1 2322 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 ARHGEF28Q8N1W1 1705 aaKnown RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 A0A1B0GV50 99 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 UMAD1C9J7I0 102 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 PRKNO60260 465 aaPredicted RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 PMP2P02689 132 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 ADORA2A-AS1P86434 159 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 DEFB112Q30KQ8 113 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 TMUB2Q71RG4 321 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 PRSS41Q7RTY9 318 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 OR52E5Q8NH55 327 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 PFN4Q8NHR9 129 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 RNF138Q8WVD3 245 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 BCL7BQ9BQE9 202 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 TMEM70Q9BUB7 260 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 DNAJC4Q9NNZ3 241 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 WIPF3A6NGB9 483 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 LYNX1G3V0Z9 82 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 H3BMM0 161 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 HSBP1O75506 76 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 CDS2O95674 445 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 IGHA1P01876 353 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 IGHA2P01877 340 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 RNASE1P07998 156 aaKnown RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 LYNX1P0DP58 116 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 UBE2AP49459 152 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 SURF2Q15527 256 aaPredicted RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 FBXL19-AS1Q494R0 122 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 FAM78BQ5VT40 261 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 C5orf24Q7Z6I8 188 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 TMEM219Q86XT9 240 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 LGALS14Q8TCE9 139 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 MZB1Q8WU39 189 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 UBE2E2Q96LR5 201 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 SRSF8Q9BRL6 282 aaKnown RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 SPXQ9BT56 116 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 NPCDR1Q9BY65 106 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 DDX60Q8IY21 1712 aaKnown RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 SPEF2Q9C093 1822 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 DPRXA6NFQ7 191 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 OR2H2O95918 312 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 DLK1P80370 383 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 RPL24P83731 157 aaKnown RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 DEFA5Q01523 94 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 CDK5R1Q15078 307 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 BAK1Q16611 211 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 LINC00322Q6ZN03 302 aaPredicted RBP3.39□□□□□ -1.87
USH2A-202ENST00000366942 ZNF329Q86UD4 541 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 LINC00337Q8N6G1 96 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 OR5H6Q8NGV6 325 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 EMCNQ9ULC0 261 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 ZNFX1Q9P2E3 1918 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 HMX2A2RU54 273 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 E7EQL1 145 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 J3KTA2 159 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 SLC17A2O00624 439 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 RS1O15537 224 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 CD3DP04234 171 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 ARL14EPLP0DKL9 152 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 HIST1H1DP16402 221 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 SRSF9Q13242 221 aaKnown RBP eCLIP3.38□□□□□ -1.87
USH2A-202ENST00000366942 MBNL2Q5VZF2 373 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 ZNF826PQ6ZT77 177 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 RNASEH2CQ8TDP1 164 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 ZNF431Q8TF32 576 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 GLMPQ8WWB7 406 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 TCF19Q9Y242 345 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 ARID1BQ8NFD5 2236 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 SPTBP11277 2137 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 TTC3P53804 2025 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 TRBV7-9A0A0J9YWB2 115 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 A0A1W2PPE3 182 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 TMEM14DPA8MWL7 114 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 LGALS3P17931 250 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 KLF5Q13887 457 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 FCN2Q15485 313 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 ANXA2RQ3ZCQ2 193 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 C6orf226Q5I0X4 101 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 OR11H7Q8NGC8 314 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 SFT2D1Q8WV19 159 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 DSCR8Q96T75 97 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 MLST8Q9BVC4 326 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 TMEM160Q9NX00 188 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 DCAF16Q9NXF7 216 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms