RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 LHFPL1Q86WI0 220 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 OR1L8Q8NGR8 309 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 THAP7Q9BT49 309 aaPredicted RBP13.94□□□□□ -0.18
CLN3-202ENST00000355477 FAM212BQ9NTI7 297 aaPredicted RBP13.94□□□□□ -0.18
CLN3-202ENST00000355477 OR51B2Q9Y5P1 312 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 SNAPC5O75971 98 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 IFNA6P05013 189 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 SERPINE2P07093 398 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 PI3P19957 117 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 S100GP29377 79 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 ARL3P36405 182 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 TMBIM6P55061 237 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 DYNC2LI1Q8TCX1 351 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 RAB2BQ8WUD1 216 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 SEC22AQ96IW7 307 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 WWC2-AS2Q96NR7 200 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 HINT2Q9BX68 163 aa13.93□□□□□ -0.18
CLN3-202ENST00000355477 TRBV7-1A0A0A6YYK4 115 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 C2orf70A6NJV1 201 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 CLEC3BP05452 202 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 IGHV4-30-4P0DP06 118 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 PTBP1P26599 531 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLN3-202ENST00000355477 MFAP2P55001 183 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 THOC7Q6I9Y2 204 aaKnown RBP13.92□□□□□ -0.18
CLN3-202ENST00000355477 GPHB5Q86YW7 130 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 GDPD1Q8N9F7 314 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 TMEM229BQ8NBD8 167 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 C15orf40Q8WUR7 153 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 CXorf58Q96LI9 332 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 ZC4H2Q9NQZ6 224 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 TMEM14BQ9NUH8 114 aa13.92□□□□□ -0.18
CLN3-202ENST00000355477 GABARAPH6UMI1 98 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 LGALS9O00182 355 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 CD74P04233 296 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 PGAM2P15259 253 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 TBPP20226 339 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 CD300EQ496F6 205 aaPredicted RBP13.91□□□□□ -0.18
CLN3-202ENST00000355477 LCN12Q6JVE5 192 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 Q8N402 240 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 ARRDC1Q8N5I2 433 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 ZNF502Q8TBZ5 544 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 LSM10Q969L4 123 aaKnown RBP13.91□□□□□ -0.18
CLN3-202ENST00000355477 PRNDQ9UKY0 176 aa13.91□□□□□ -0.18
CLN3-202ENST00000355477 C15orf61A6NNL5 157 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 FOLR2P14207 255 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 RPL5P46777 297 aaKnown RBP13.9□□□□□ -0.18
CLN3-202ENST00000355477 PIGPP57054 158 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 RND3P61587 244 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 DEFB114Q30KQ6 69 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 SLC25A24Q6NUK1 477 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 HSD17B13Q7Z5P4 300 aaPredicted RBP13.9□□□□□ -0.18
CLN3-202ENST00000355477 CACNG8Q8WXS5 425 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 MRGPRFQ96AM1 343 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 ZNF486Q96H40 463 aaPredicted RBP13.9□□□□□ -0.18
CLN3-202ENST00000355477 BCL7BQ9BQE9 202 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 C19orf73Q9NVV2 129 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 FKBP11Q9NYL4 201 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 CCDC59Q9P031 241 aaKnown RBP13.9□□□□□ -0.18
CLN3-202ENST00000355477 F11RQ9Y624 299 aaKnown RBP13.9□□□□□ -0.18
CLN3-202ENST00000355477 SELENOKQ9Y6D0 94 aa13.9□□□□□ -0.18
CLN3-202ENST00000355477 DNAH7Q8WXX0 4024 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 ZNF320A2RRD8 509 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 ZNF785A8K8V0 405 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 H3BMQ9 156 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 RAB3DO95716 219 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 GPR183P32249 361 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 PPP5CP53041 499 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 TAS2R19P59542 299 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 IZUMO4Q1ZYL8 232 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 FAAP20Q6NZ36 180 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 STEAP1BQ6NZ63 245 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 H2BFWTQ7Z2G1 175 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 OR2K2Q8NGT1 345 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 OR5B3Q8NH48 314 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 TERB2Q8NHR7 220 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 DIRAS2Q96HU8 199 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 TP53RKQ96S44 253 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 THYN1Q9P016 225 aa13.89□□□□□ -0.19
CLN3-202ENST00000355477 IGHV3-21A0A0B4J1V1 117 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 IGHV3-35A0A0C4DH35 117 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 TMEM213A2RRL7 107 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 A8MZ25 164 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 CBLN1P23435 193 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 MRPS10P82664 201 aaKnown RBP13.88□□□□□ -0.19
CLN3-202ENST00000355477 SCGB2B2Q4G0G5 96 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 FAM106AQ4KMX7 169 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 UNQ9165/PRO28630Q6UXU0 137 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 SGPP2Q8IWX5 399 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 OR13C8Q8NGS7 320 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 OR4A16Q8NH70 328 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 VN1R17PQ8TDU5 208 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 SMIM4Q8WVI0 70 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 ISOC1Q96CN7 298 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 TSC22D3Q99576 134 aa13.88□□□□□ -0.19
CLN3-202ENST00000355477 CYB5BO43169 146 aa13.87□□□□□ -0.19
CLN3-202ENST00000355477 IGKV1-5P01602 117 aa13.87□□□□□ -0.19
CLN3-202ENST00000355477 SSBP1Q04837 148 aaKnown RBP13.87□□□□□ -0.19
CLN3-202ENST00000355477 IL18Q14116 193 aa13.87□□□□□ -0.19
CLN3-202ENST00000355477 TM4SF20Q53R12 229 aa13.87□□□□□ -0.19
CLN3-202ENST00000355477 GTSCR1Q86UQ5 136 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms