RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TMEM231Q9H6L2 316 aa14.81□□□□□ -0.04
USP39-201ENST00000323701 DPM3Q9P2X0 92 aa14.81□□□□□ -0.04
USP39-201ENST00000323701 FBXO7Q9Y3I1 522 aa14.81□□□□□ -0.04
USP39-201ENST00000323701 NAV2Q8IVL1 2488 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 PRSS46E5RG02 174 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 RPL8P62917 257 aaKnown RBP14.8□□□□□ -0.04
USP39-201ENST00000323701 LRRC75BQ2VPJ9 315 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 OR10P1Q8NGE3 313 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 SAT2Q96F10 170 aaPredicted RBP14.8□□□□□ -0.04
USP39-201ENST00000323701 HIPK2Q9H2X6 1198 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 ZNF257Q9Y2Q1 563 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 AMMECR1Q9Y4X0 333 aaPredicted RBP14.8□□□□□ -0.04
USP39-201ENST00000323701 IFNA5P01569 189 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 PRCDQ00LT1 54 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 BTNL8Q6UX41 500 aa14.8□□□□□ -0.04
USP39-201ENST00000323701 WDR61Q9GZS3 305 aaKnown RBP14.8□□□□□ -0.04
USP39-201ENST00000323701 ZNF787Q6DD87 383 aa14.79□□□□□ -0.04
USP39-201ENST00000323701 SLC25A24Q6NUK1 477 aa14.79□□□□□ -0.04
USP39-201ENST00000323701 CFHR4Q92496 578 aa14.79□□□□□ -0.04
USP39-201ENST00000323701 VSIRQ9H7M9 311 aa14.79□□□□□ -0.04
USP39-201ENST00000323701 NDUFA4L2Q9NRX3 87 aa14.79□□□□□ -0.04
USP39-201ENST00000323701 TOX4O94842 621 aa14.78□□□□□ -0.04
USP39-201ENST00000323701 CA2P00918 260 aa14.78□□□□□ -0.04
USP39-201ENST00000323701 SSX2Q16385 188 aa14.78□□□□□ -0.04
USP39-201ENST00000323701 CLEC2AQ6UVW9 174 aa14.78□□□□□ -0.04
USP39-201ENST00000323701 AGPAT2O15120 278 aa14.78□□□□□ -0.04
USP39-201ENST00000323701 CRYGBP07316 175 aa14.78□□□□□ -0.04
USP39-201ENST00000323701 USF1P22415 310 aaPredicted RBP14.78□□□□□ -0.04
USP39-201ENST00000323701 TAF15Q92804 592 aaKnown RBP eCLIP14.78□□□□□ -0.04
USP39-201ENST00000323701 GNPNAT1Q96EK6 184 aaPredicted RBP14.78□□□□□ -0.04
USP39-201ENST00000323701 AJUBAQ96IF1 538 aa14.78□□□□□ -0.04
USP39-201ENST00000323701 PARP11Q9NR21 331 aa14.78□□□□□ -0.04
USP39-201ENST00000323701 VENTXO95231 258 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 PRH1P02810 166 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 F2RL1P55085 397 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 ZNF616Q08AN1 781 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 PSG5Q15238 335 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 ETV3LQ6ZN32 361 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 SLC24A4Q8NFF2 622 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 OR5B3Q8NH48 314 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 LYPD6BQ8NI32 183 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 FAM213BQ8TBF2 198 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 SAV1Q9H4B6 383 aaPredicted RBP14.77□□□□□ -0.04
USP39-201ENST00000323701 PLEKHA3Q9HB20 300 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 UQCC1Q9NVA1 299 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 FAM96BQ9Y3D0 163 aa14.77□□□□□ -0.04
USP39-201ENST00000323701 A0A1B0GV50 99 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 OR8U8P0C7N1 319 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 LGALS7P47929 136 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 CAMLGP49069 296 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 DVL1P1P54792 670 aaPredicted RBP14.77□□□□□ -0.05
USP39-201ENST00000323701 VWC2Q2TAL6 325 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 C10orf91Q5T1B1 145 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 SCGB1C1Q8TD33 95 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 PINX1Q96BK5 328 aaKnown RBP14.77□□□□□ -0.05
USP39-201ENST00000323701 CLCC1Q96S66 551 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 TMEM147Q9BVK8 224 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 COMMD5Q9GZQ3 224 aa14.77□□□□□ -0.05
USP39-201ENST00000323701 ZNF98A6NK75 572 aa14.76□□□□□ -0.05
USP39-201ENST00000323701 FOXH1O75593 365 aa14.76□□□□□ -0.05
USP39-201ENST00000323701 H2AFB1P0C5Y9 115 aa14.76□□□□□ -0.05
USP39-201ENST00000323701 PLA2G2AP14555 144 aa14.76□□□□□ -0.05
USP39-201ENST00000323701 MDKP21741 143 aaPredicted RBP14.76□□□□□ -0.05
USP39-201ENST00000323701 WT1-ASQ06250 92 aa14.76□□□□□ -0.05
USP39-201ENST00000323701 C1orf159Q96HA4 380 aa14.76□□□□□ -0.05
USP39-201ENST00000323701 ABCA1O95477 2261 aa14.76□□□□□ -0.05
USP39-201ENST00000323701 NDUFS8O00217 210 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 FCN1O00602 326 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 NPY1RP25929 384 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 SSBP2P81877 361 aaPredicted RBP14.75□□□□□ -0.05
USP39-201ENST00000323701 VMA21Q3ZAQ7 101 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 HIST2H2BCQ6DN03 193 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 VSTM2AQ8TAG5 236 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 FBXL15Q9H469 300 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 FKBP11Q9NYL4 201 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 POLR3KQ9Y2Y1 108 aaPredicted RBP14.75□□□□□ -0.05
USP39-201ENST00000323701 SIGLEC9Q9Y336 463 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 GCN1Q92616 2671 aaKnown RBP14.75□□□□□ -0.05
USP39-201ENST00000323701 ZNF469Q96JG9 3925 aaPredicted RBP14.75□□□□□ -0.05
USP39-201ENST00000323701 F8W036 122 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 EIF3GO75821 320 aaKnown RBP eCLIP14.75□□□□□ -0.05
USP39-201ENST00000323701 IFNA4P05014 189 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 BLOC1S1P78537 153 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 HABP2Q14520 560 aaPredicted RBP14.75□□□□□ -0.05
USP39-201ENST00000323701 IL34Q6ZMJ4 242 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 OR1L8Q8NGR8 309 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 OR4A5Q8NH83 315 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 TREM1Q9NP99 234 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 ENY2Q9NPA8 101 aa14.75□□□□□ -0.05
USP39-201ENST00000323701 IGKV1D-33P01593 117 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 IGKV1-33P01594 117 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 FGF7P21781 194 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 PRSS8Q16651 343 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 ATP6V1FQ16864 119 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 ARSJQ5FYB0 599 aaPredicted RBP14.74□□□□□ -0.05
USP39-201ENST00000323701 TMEM88Q6PEY1 159 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 PARD6GQ9BYG4 376 aaPredicted RBP14.74□□□□□ -0.05
USP39-201ENST00000323701 RPRMQ9NS64 109 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 CARHSP1Q9Y2V2 147 aaKnown RBP14.74□□□□□ -0.05
USP39-201ENST00000323701 NUDT19A8MXV4 375 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms