RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 TRAPPC2BP0DI82 140 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 LYG2Q86SG7 212 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 NDUFA11Q86Y39 141 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 OR5B3Q8NH48 314 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 FAM110DQ8TAY7 271 aaPredicted RBP17.44■□□□□ 0.38
HOXD4-201ENST00000306324 LSM10Q969L4 123 aaKnown RBP17.44■□□□□ 0.38
HOXD4-201ENST00000306324 GPR146Q96CH1 333 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 SHPKQ9UHJ6 478 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 PIGBOS1A0A0B4J2F0 54 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 AREGP15514 252 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 RAB9AP51151 201 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 Q6ZRM9 215 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 RNF152Q8N8N0 203 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 OR10W1Q8NGF6 305 aa17.44■□□□□ 0.38
HOXD4-201ENST00000306324 ALX4Q9H161 411 aaPredicted RBP17.44■□□□□ 0.38
HOXD4-201ENST00000306324 WNK1Q9H4A3 2382 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 REG1AP05451 166 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 TTC9CQ8N5M4 171 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 LRTM2Q8N967 370 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 DUSP18Q8NEJ0 188 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 OR52B4Q8NGK2 314 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 NDUFA4L2Q9NRX3 87 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 ZFP57Q9NU63 452 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 CACNG5Q9UF02 275 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 ZNF257Q9Y2Q1 563 aa17.43■□□□□ 0.38
HOXD4-201ENST00000306324 MECP2P51608 486 aaKnown RBP17.42■□□□□ 0.38
HOXD4-201ENST00000306324 TPPP2P59282 170 aa17.42■□□□□ 0.38
HOXD4-201ENST00000306324 RPL23AP62750 156 aaKnown RBP17.42■□□□□ 0.38
HOXD4-201ENST00000306324 THOC7Q6I9Y2 204 aaKnown RBP17.42■□□□□ 0.38
HOXD4-201ENST00000306324 ZNF429Q86V71 674 aa17.42■□□□□ 0.38
HOXD4-201ENST00000306324 COQ8AQ8NI60 647 aa17.42■□□□□ 0.38
HOXD4-201ENST00000306324 PDCD10Q9BUL8 212 aa17.42■□□□□ 0.38
HOXD4-201ENST00000306324 TRRAPQ9Y4A5 3859 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 DUXBA0A1W2PPF3 345 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 IGLC7A0M8Q6 106 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 ADARB2-AS1A8MUL3 147 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 NUDT19A8MXV4 375 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 M0QZ24 198 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 ST8SIA3O43173 380 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 DUS4LO95620 317 aaKnown RBP17.41■□□□□ 0.38
HOXD4-201ENST00000306324 IFNA17P01571 189 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 PRH1P02810 166 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 TRGV3P03979 118 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 HSPE1P61604 102 aaKnown RBP17.41■□□□□ 0.38
HOXD4-201ENST00000306324 C2orf68Q2NKX9 166 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 NMSQ5H8A3 153 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 PLET1Q6UQ28 207 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 C19orf35Q6ZS72 473 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 SLA2Q9H6Q3 261 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.41■□□□□ 0.38
HOXD4-201ENST00000306324 VWFP04275 2813 aa17.41■□□□□ 0.38
HOXD4-201ENST00000306324 NPIPB5A8MRT5 1133 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 H3BUA1 57 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 HOXB5P09067 269 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 SULT1A3P0DMM9 295 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 SULT1A4P0DMN0 295 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 OR13C7P0DN81 318 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 PSMB6P28072 239 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 SPINK9Q5DT21 86 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 C18orf65Q6ZTR6 163 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 KLHL30-AS1Q8NEE0 82 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 SRSF8Q9BRL6 282 aaKnown RBP17.4■□□□□ 0.38
HOXD4-201ENST00000306324 SEC22CQ9BRL7 303 aa17.4■□□□□ 0.38
HOXD4-201ENST00000306324 PRCDQ00LT1 54 aa17.39■□□□□ 0.37
HOXD4-201ENST00000306324 HSD17B13Q7Z5P4 300 aaPredicted RBP17.39■□□□□ 0.37
HOXD4-201ENST00000306324 MYOZ3Q8TDC0 251 aa17.39■□□□□ 0.37
HOXD4-201ENST00000306324 PALMDQ9NP74 551 aa17.39■□□□□ 0.37
HOXD4-201ENST00000306324 DEFA4P12838 97 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 CTRB1P17538 263 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 CDX1P47902 265 aaPredicted RBP17.38■□□□□ 0.37
HOXD4-201ENST00000306324 DEFA5Q01523 94 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 WT1-ASQ06250 92 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 CTRB2Q6GPI1 263 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 ZNF491Q8N8L2 437 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 UBE2E2Q96LR5 201 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 PLEKHA3Q9HB20 300 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 TMED3Q9Y3Q3 217 aa17.38■□□□□ 0.37
HOXD4-201ENST00000306324 NXPH3O95157 252 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 DHFRP00374 187 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 CRYGCP07315 174 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 KIAA0141Q14154 515 aaPredicted RBP17.37■□□□□ 0.37
HOXD4-201ENST00000306324 SMCO1Q147U7 214 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 MITD1Q8WV92 249 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 OR5B12Q96R08 314 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 INMT-MINDY4F8WBC2 141 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 ADAP1O75689 374 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 GGNBP1Q5YKI7 109 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 C8orf86Q6ZUL3 223 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 MRPL41Q8IXM3 137 aaKnown RBP17.37■□□□□ 0.37
HOXD4-201ENST00000306324 ZNF431Q8TF32 576 aaPredicted RBP17.37■□□□□ 0.37
HOXD4-201ENST00000306324 GNB4Q9HAV0 340 aa17.37■□□□□ 0.37
HOXD4-201ENST00000306324 A0A1B0GU03 582 aa17.36■□□□□ 0.37
HOXD4-201ENST00000306324 BRI3O95415 125 aa17.36■□□□□ 0.37
HOXD4-201ENST00000306324 TSPAN15O95858 294 aa17.36■□□□□ 0.37
HOXD4-201ENST00000306324 IGHV3-11P01762 117 aa17.36■□□□□ 0.37
HOXD4-201ENST00000306324 SPNP16150 400 aa17.36■□□□□ 0.37
HOXD4-201ENST00000306324 HOXA1P49639 335 aaPredicted RBP17.36■□□□□ 0.37
HOXD4-201ENST00000306324 RHOGP84095 191 aa17.36■□□□□ 0.37
HOXD4-201ENST00000306324 DCTN2Q13561 401 aaKnown RBP17.36■□□□□ 0.37
HOXD4-201ENST00000306324 UXS1Q8NBZ7 420 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms