RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 A0A1W2PPM0 123 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 hDV102S1A0JD36 115 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 H3BP45 60 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 M0R2Z0 102 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 HSBP1O75506 76 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 IGKV1D-33P01593 117 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 IGKV1-33P01594 117 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 HIST1H1EP10412 219 aaKnown RBP8.58□□□□□ -1.04
VPS39-214ENST00000614932 EGR1P18146 543 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 TMEM70Q9BUB7 260 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 SLC25A22Q9H936 323 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 TNRC6AQ8NDV7 1962 aaKnown RBP8.58□□□□□ -1.04
VPS39-214ENST00000614932 URB1O60287 2271 aaKnown RBP8.58□□□□□ -1.04
VPS39-214ENST00000614932 TRAV38-1A0A0B4J264 116 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 A0A1W2PQD3 144 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 SLC17A3O00476 420 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 NXPH3O95157 252 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 NDUFB4O95168 129 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 NAPSAO96009 420 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 PTGDSP41222 190 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 OR52E5Q8NH55 327 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 APOBEC3DQ96AK3 386 aaPredicted RBP8.58□□□□□ -1.04
VPS39-214ENST00000614932 RAX2Q96IS3 184 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 NAA38Q9BRA0 125 aaKnown RBP8.58□□□□□ -1.04
VPS39-214ENST00000614932 DEFB126Q9BYW3 111 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 TXNIPQ9H3M7 391 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 UBE2J1Q9Y385 318 aaPredicted RBP8.58□□□□□ -1.04
VPS39-214ENST00000614932 FBLL1A6NHQ2 334 aaKnown RBP8.57□□□□□ -1.04
VPS39-214ENST00000614932 ISLRO14498 428 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 HBZP02008 142 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 CDAP32320 146 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 UQCRFS1P47985 274 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 RPEL1Q2QD12 228 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 ZNF562Q6V9R5 426 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 OR5AS1Q8N127 324 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 CRIM1Q9NZV1 1036 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 EML6Q6ZMW3 1958 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 IGLV1-36A0A0B4J1U3 117 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 IGHV3-15A0A0B4J1V0 119 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 B5MCH6 92 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 BMPR1BO00238 502 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 DXOO77932 396 aaKnown RBP8.57□□□□□ -1.04
VPS39-214ENST00000614932 APOA2P02652 100 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 RPS18P62269 152 aaKnown RBP8.57□□□□□ -1.04
VPS39-214ENST00000614932 MYBPHQ13203 477 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 ZNF585BQ52M93 769 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 ADAMTSL5Q6ZMM2 481 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 TMEM136Q6ZRR5 245 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 OR1F12Q8NHA8 337 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 NEU4Q8WWR8 484 aaPredicted RBP8.57□□□□□ -1.04
VPS39-214ENST00000614932 LSM10Q969L4 123 aaKnown RBP8.57□□□□□ -1.04
VPS39-214ENST00000614932 HDHD3Q9BSH5 251 aaPredicted RBP8.57□□□□□ -1.04
VPS39-214ENST00000614932 HSPB8Q9UJY1 196 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 ZNF835Q9Y2P0 537 aa8.57□□□□□ -1.04
VPS39-214ENST00000614932 SRSF6Q13247 344 aaKnown RBP8.56□□□□□ -1.04
VPS39-214ENST00000614932 TNXAQ16473 311 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 RSPO4Q2I0M5 234 aaPredicted RBP8.56□□□□□ -1.04
VPS39-214ENST00000614932 SLC23A3Q6PIS1 610 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 MMD2Q8IY49 270 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 SSC4DQ8WTU2 575 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 C1RLQ9NZP8 487 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 CLCF1Q9UBD9 225 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 ZNF257Q9Y2Q1 563 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 LOC400499M0QZD8 3231 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 KIAA1549Q9HCM3 1950 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 MT-ATP6P00846 226 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 FABP2P12104 132 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 ZNF823P16415 610 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 MFAP5Q13361 173 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 NMSQ5H8A3 153 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 ACSM6Q6P461 480 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 C6orf201Q7Z4U5 140 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 TAF15Q92804 592 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS39-214ENST00000614932 RAB40CQ96S21 281 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 PMCHL2Q9BQD1 86 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 RAB1BQ9H0U4 201 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 MS4A6AQ9H2W1 248 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 TIMM9Q9Y5J7 89 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 ADAMTS20P59510 1910 aa8.56□□□□□ -1.04
VPS39-214ENST00000614932 AHCTF1Q8WYP5 2266 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 IGLV3-12A0A075B6K2 115 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 ZFAND5O76080 213 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 CRYAAP02489 173 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 HBG1P69891 147 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 HBG2P69892 147 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 H1FNTQ75WM6 255 aaPredicted RBP8.55□□□□□ -1.04
VPS39-214ENST00000614932 BPIFA4PQ86YQ2 179 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 OCC1Q8TAD7 63 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 RNF133Q8WVZ7 376 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 SPANXB1Q9NS25 103 aaPredicted RBP8.55□□□□□ -1.04
VPS39-214ENST00000614932 TRBV20OR9-2A0A075B6H5 130 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 LIPT2A6NK58 231 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 CRXO43186 299 aaPredicted RBP8.55□□□□□ -1.04
VPS39-214ENST00000614932 ATP5J2P56134 94 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 C2orf91Q6ZV80 131 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 OR10G9Q8NGN4 311 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 OR10G7Q8NGN6 311 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 SPAG8Q99932 426 aaPredicted RBP8.55□□□□□ -1.04
VPS39-214ENST00000614932 PKIBQ9C010 78 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 KCNIP2Q9NS61 270 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms