RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 C15orf32Q32M92 178 aa12.89□□□□□ -0.35
HMGN4-201ENST00000377575 OR9G4Q8NGQ1 327 aa12.89□□□□□ -0.35
HMGN4-201ENST00000377575 DGCR14Q96DF8 476 aaKnown RBP12.89□□□□□ -0.35
HMGN4-201ENST00000377575 COMMD5Q9GZQ3 224 aa12.89□□□□□ -0.35
HMGN4-201ENST00000377575 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.88□□□□□ -0.35
HMGN4-201ENST00000377575 A0A1B0GW64 132 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 MARCH11A6NNE9 402 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 E7EUB6 86 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 OR2J3O76001 311 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 CRYGCP07315 174 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 GP9P14770 177 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 SPNP16150 400 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 HIST1H1BP16401 226 aaKnown RBP12.88□□□□□ -0.35
HMGN4-201ENST00000377575 PSMB6P28072 239 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 RNASE12Q5GAN4 147 aaKnown RBP12.88□□□□□ -0.35
HMGN4-201ENST00000377575 VAX1Q5SQQ9 334 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 THOC7Q6I9Y2 204 aaKnown RBP12.88□□□□□ -0.35
HMGN4-201ENST00000377575 CLVS1Q8IUQ0 354 aaPredicted RBP12.88□□□□□ -0.35
HMGN4-201ENST00000377575 SLC38A6Q8IZM9 456 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 RAB2BQ8WUD1 216 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 BCL7BQ9BQE9 202 aa12.88□□□□□ -0.35
HMGN4-201ENST00000377575 SRSF8Q9BRL6 282 aaKnown RBP12.88□□□□□ -0.35
HMGN4-201ENST00000377575 RGS5O15539 181 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 NOL3O60936 208 aaKnown RBP12.87□□□□□ -0.35
HMGN4-201ENST00000377575 IFNA6P05013 189 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 DEFA4P12838 97 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 AREGP15514 252 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 CTRB1P17538 263 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 TBPP20226 339 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 OR2B8PP59922 312 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 PHLDA2Q53GA4 152 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 CTRB2Q6GPI1 263 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 QTRT1Q9BXR0 403 aaKnown RBP12.87□□□□□ -0.35
HMGN4-201ENST00000377575 FAM212BQ9NTI7 297 aaPredicted RBP12.87□□□□□ -0.35
HMGN4-201ENST00000377575 PEMTQ9UBM1 199 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 FBXL7Q9UJT9 491 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 SMAD5-AS1Q9Y6J3 95 aa12.87□□□□□ -0.35
HMGN4-201ENST00000377575 BMPR1BO00238 502 aa12.86□□□□□ -0.35
HMGN4-201ENST00000377575 IGLV1-51P01701 117 aa12.86□□□□□ -0.35
HMGN4-201ENST00000377575 MYOD1P15172 320 aa12.86□□□□□ -0.35
HMGN4-201ENST00000377575 LPAR6P43657 344 aa12.86□□□□□ -0.35
HMGN4-201ENST00000377575 UCP3P55916 312 aa12.86□□□□□ -0.35
HMGN4-201ENST00000377575 SPCS2Q15005 226 aa12.86□□□□□ -0.35
HMGN4-201ENST00000377575 RNASE10Q5GAN6 216 aaKnown RBP12.86□□□□□ -0.35
HMGN4-201ENST00000377575 FCAMRQ8WWV6 532 aa12.86□□□□□ -0.35
HMGN4-201ENST00000377575 CCDC59Q9P031 241 aaKnown RBP12.86□□□□□ -0.35
HMGN4-201ENST00000377575 DNAH9Q9NYC9 4486 aa12.86□□□□□ -0.35
HMGN4-201ENST00000377575 TRAV3A0A0B4J244 114 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 CGB1A6NKQ9 187 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 M0QYG6 137 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 CYB5BO43169 146 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 REG1AP05451 166 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 NHLRC4P0CG21 123 aaPredicted RBP12.85□□□□□ -0.35
HMGN4-201ENST00000377575 RPA2P15927 270 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 TMBIM6P55061 237 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 C11orf87Q6NUJ2 197 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 C19orf35Q6ZS72 473 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 HSD17B13Q7Z5P4 300 aaPredicted RBP12.85□□□□□ -0.35
HMGN4-201ENST00000377575 TBC1D26Q86UD7 250 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 HAPLN4Q86UW8 402 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 LAX1Q8IWV1 398 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 CADM3Q8N126 398 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 ARRDC1Q8N5I2 433 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 OR52I2Q8NH67 350 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 EEF1AKMT3Q96AZ1 226 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 FANCD2OSQ96PS1 177 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 KLK11Q9UBX7 282 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 MTFP1Q9UDX5 166 aa12.85□□□□□ -0.35
HMGN4-201ENST00000377575 IGLC7A0M8Q6 106 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 SNAPC5O75971 98 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 KRASP01116 189 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 G6PCP35575 357 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 MRPS10P82664 201 aaKnown RBP12.84□□□□□ -0.35
HMGN4-201ENST00000377575 KLK9Q2XQG4 91 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 OR1L8Q8NGR8 309 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 ABHD1Q96SE0 405 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 TSC22D3Q99576 134 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 SIGLEC8Q9NYZ4 499 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 THYN1Q9P016 225 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 KLK9Q9UKQ9 250 aa12.84□□□□□ -0.35
HMGN4-201ENST00000377575 IGLV11-55A0A075B6I3 123 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 PPP5D1E7EU14 171 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 H0Y980 276 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 GGCTO75223 188 aaKnown RBP12.83□□□□□ -0.36
HMGN4-201ENST00000377575 CD3DP04234 171 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 TRAPPC2P0DI81 140 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 TRAPPC2BP0DI82 140 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 PGAM2P15259 253 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 RPL5P46777 297 aaKnown RBP12.83□□□□□ -0.36
HMGN4-201ENST00000377575 TAS2R19P59542 299 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 SSBP1Q04837 148 aaKnown RBP12.83□□□□□ -0.36
HMGN4-201ENST00000377575 ZNF585BQ52M93 769 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 ZNF486Q96H40 463 aaPredicted RBP12.83□□□□□ -0.36
HMGN4-201ENST00000377575 CXorf58Q96LI9 332 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 MIXL1Q9H2W2 232 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 RABL2AQ9UBK7 228 aaPredicted RBP12.83□□□□□ -0.36
HMGN4-201ENST00000377575 PRNDQ9UKY0 176 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 RABL2BQ9UNT1 228 aa12.83□□□□□ -0.36
HMGN4-201ENST00000377575 TRBV7-1A0A0A6YYK4 115 aa12.82□□□□□ -0.36
HMGN4-201ENST00000377575 GABARAPH6UMI1 98 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms