RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 COMMD9Q9P000 198 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 DPPA5A6NC42 116 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 SOX15O60248 233 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 PGAM2P15259 253 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 CD33P20138 364 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 ECI1P42126 302 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 POU2AF1Q16633 256 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 SCGB2B2Q4G0G5 96 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 PYDC2Q56P42 97 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 C18orf65Q6ZTR6 163 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 SSX9Q7RTT3 188 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 TBC1D26Q86UD7 250 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 WFDC9Q8NEX5 89 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 OR4D10Q8NGI6 311 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 ZFAND1Q8TCF1 268 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 MYOZ3Q8TDC0 251 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 C4orf3Q8WVX3 66 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 SRSF12Q8WXF0 261 aaKnown RBP11.72□□□□□ -0.53
UPF1-202ENST00000594243 SPIN2AQ99865 258 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 SPIN2BQ9BPZ2 258 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 THAP7Q9BT49 309 aaPredicted RBP11.72□□□□□ -0.53
UPF1-202ENST00000594243 FAM212BQ9NTI7 297 aaPredicted RBP11.72□□□□□ -0.53
UPF1-202ENST00000594243 BET1LQ9NYM9 111 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 VSIG4Q9Y279 399 aa11.72□□□□□ -0.53
UPF1-202ENST00000594243 ANKRD20A5PA0PJZ0 165 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 H3BUA1 57 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 MPPED1O15442 326 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 LPAR6P43657 344 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 KIAA0141Q14154 515 aaPredicted RBP11.71□□□□□ -0.53
UPF1-202ENST00000594243 SPANXN2Q5MJ10 180 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 OR4A47Q6IF82 309 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 CCDC190Q86UF4 302 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 DMBX1Q8NFW5 382 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 OR5T1Q8NG75 326 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 HRASLSQ9HDD0 168 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 ZNF355PQ9NSJ1 428 aa11.71□□□□□ -0.53
UPF1-202ENST00000594243 CCL24O00175 119 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 S1PR2O95136 353 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 BRI3O95415 125 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 ZNF735P0CB33 412 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 ERVK-16P61578 105 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 RND3P61587 244 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 RPL8P62917 257 aaKnown RBP11.7□□□□□ -0.54
UPF1-202ENST00000594243 MS4A10Q96PG2 267 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 PRRT1Q99946 306 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 SLC2A9Q9NRM0 540 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 V9GYH0 126 aa11.7□□□□□ -0.54
UPF1-202ENST00000594243 MARCH11A6NNE9 402 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 UPK2O00526 184 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 TRGV3P03979 118 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 IL6RP08887 468 aaPredicted RBP11.69□□□□□ -0.54
UPF1-202ENST00000594243 FGF2P09038 288 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 ETV6P41212 452 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 RPL27AP46776 148 aaKnown RBP11.69□□□□□ -0.54
UPF1-202ENST00000594243 PPP5CP53041 499 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 PIGPP57054 158 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 TPPP2P59282 170 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 AP3S2P59780 193 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 SURF2Q15527 256 aaPredicted RBP11.69□□□□□ -0.54
UPF1-202ENST00000594243 ZNF585BQ52M93 769 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 ASPHD1Q5U4P2 390 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 FAAP20Q6NZ36 180 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 ETV3LQ6ZN32 361 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 SLC25A42Q86VD7 318 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 MRPL41Q8IXM3 137 aaKnown RBP11.69□□□□□ -0.54
UPF1-202ENST00000594243 CADM3Q8N126 398 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 Q8N402 240 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 CCDC71LQ8N9Z2 235 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 OR4C16Q8NGL9 310 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 OR6Q1Q8NGQ2 317 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 CASTOR1Q8WTX7 329 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 P2RX4Q99571 388 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 TMEM140Q9NV12 185 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 COPZ2Q9P299 210 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 SCP2D1Q9UJQ7 156 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 CMYA5Q8N3K9 4069 aa11.69□□□□□ -0.54
UPF1-202ENST00000594243 A0A0G2JLM5 398 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 DUS4LO95620 317 aaKnown RBP11.68□□□□□ -0.54
UPF1-202ENST00000594243 KRASP01116 189 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 CTSDP07339 412 aaPredicted RBP11.68□□□□□ -0.54
UPF1-202ENST00000594243 OR9G9P0C7N8 305 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 HLA-GP17693 338 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 FAUP35544 74 aaKnown RBP11.68□□□□□ -0.54
UPF1-202ENST00000594243 RUNX1Q01196 453 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 TTC9CQ8N5M4 171 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 LINC00482Q8N8I6 264 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 OR11H1Q8NG94 326 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 MARCH1Q8TCQ1 289 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 RAX2Q96IS3 184 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 GNB4Q9HAV0 340 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 COA4Q9NYJ1 87 aa11.68□□□□□ -0.54
UPF1-202ENST00000594243 C14orf166Q9Y224 244 aaKnown RBP11.68□□□□□ -0.54
UPF1-202ENST00000594243 I3L521 148 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 B3GALNT1O75752 331 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 SERPINE2P07093 398 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 APELAP0DMC3 54 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 RPA2P15927 270 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 PI3P19957 117 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 G6PCP35575 357 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 ZNF79Q15937 498 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms