RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 GPR84Q9NQS5 396 aa1.74□□□□□ -2.13
SCFD1-219ENST00000556413 KAAG1Q9UBP8 84 aa1.74□□□□□ -2.13
SCFD1-219ENST00000556413 WARS2Q9UGM6 360 aaKnown RBP1.74□□□□□ -2.13
SCFD1-219ENST00000556413 KIF25Q9UIL4 384 aa1.74□□□□□ -2.13
SCFD1-219ENST00000556413 IKZF2Q9UKS7 526 aa1.74□□□□□ -2.13
SCFD1-219ENST00000556413 FAM32AQ9Y421 112 aaKnown RBP1.74□□□□□ -2.13
SCFD1-219ENST00000556413 TSSC4Q9Y5U2 329 aaPredicted RBP1.74□□□□□ -2.13
SCFD1-219ENST00000556413 GMEB1Q9Y692 573 aa1.74□□□□□ -2.13
SCFD1-219ENST00000556413 A0A0G2JLM5 398 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 PQLC2LA1A4F0 135 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RIIAD1A6NNX1 92 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 NCBP2LA6PVI3 153 aaKnown RBP1.73□□□□□ -2.13
SCFD1-219ENST00000556413 BBIP1A8MTZ0 92 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 C17orf98A8MV24 154 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 G3V318 75 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 H3BN98 237 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 J3QT63 122 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 TNFRSF11BO00300 401 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 SLC31A2O15432 143 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 NDUFA2O43678 99 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 ZNF737O75373 536 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 MED6O75586 246 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 DEDDO75618 318 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 CCNB2O95067 398 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 BRI3O95415 125 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 CLIC3O95833 236 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 NRASP01111 189 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 IFNA14P01570 189 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 IGKV1D-33P01593 117 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 IGKV1-33P01594 117 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 FABP3P05413 133 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 PGA5P0DJD9 388 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 ZNF728P0DKX0 622 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 CDK2P24941 298 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 CNTFRP26992 372 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 FMO3P31513 532 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OTX1P32242 354 aaPredicted RBP1.73□□□□□ -2.13
SCFD1-219ENST00000556413 SSTR5P35346 364 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 CAV3P56539 151 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 GRB2P62993 217 aaKnown RBP1.73□□□□□ -2.13
SCFD1-219ENST00000556413 GNG3P63215 75 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 EMX1Q04741 257 aaPredicted RBP1.73□□□□□ -2.13
SCFD1-219ENST00000556413 AESQ08117 197 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RIPPLY1Q0D2K3 151 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RAB40BQ12829 278 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 APOFQ13790 326 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 DGCR6Q14129 220 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 ZSCAN26Q16670 478 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 SMIM21Q3B7S5 101 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 TPTE2P1Q5T6R2 138 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 DRAM2Q6UX65 266 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 SLC25A26Q70HW3 274 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 GDPD3Q7L5L3 318 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OSR2Q8N2R0 312 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RPP25LQ8N5L8 163 aaKnown RBP1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RNF182Q8N6D2 247 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 NKAPP1Q8N9T2 125 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 SPERTQ8NA61 448 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 WFDC9Q8NEX5 89 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OR10G2Q8NGC3 310 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OR52H1Q8NGJ2 320 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OR5D13Q8NGL4 314 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OR13D1Q8NGV5 346 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OR10K1Q8NGX5 313 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OR10Z1Q8NGY1 313 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OR2T4Q8NH00 348 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 OR5K1Q8NHB7 308 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RNF133Q8WVZ7 376 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RASSF5Q8WWW0 418 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.73□□□□□ -2.13
SCFD1-219ENST00000556413 ARPC1AQ92747 370 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 STMN2Q93045 179 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 C12orf43Q96C57 262 aaKnown RBP1.73□□□□□ -2.13
SCFD1-219ENST00000556413 CCDC124Q96CT7 223 aaKnown RBP1.73□□□□□ -2.13
SCFD1-219ENST00000556413 ZNF714Q96N38 554 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RASL11BQ9BPW5 248 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 NRIP2Q9BQI9 281 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 KRTAP4-1Q9BYQ7 146 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 NDEL1Q9GZM8 345 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 SLC22A4Q9H015 551 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 NEK6Q9HC98 313 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 RAB18Q9NP72 206 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 GID8Q9NWU2 228 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 FAM206AQ9NX38 181 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 USE1Q9NZ43 259 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 MTCH1Q9NZJ7 389 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 ATPIF1Q9UII2 106 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 GSTK1Q9Y2Q3 226 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 HSPE1-MOB4S4R3N1 261 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 UBR4Q5T4S7 5183 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 DNAH6Q9C0G6 4158 aa1.73□□□□□ -2.13
SCFD1-219ENST00000556413 DOCK11Q5JSL3 2073 aa1.72□□□□□ -2.13
SCFD1-219ENST00000556413 IGKV1D-8A0A087WSZ0 117 aa1.72□□□□□ -2.13
SCFD1-219ENST00000556413 A0A096LNJ9 63 aa1.72□□□□□ -2.13
SCFD1-219ENST00000556413 IGKV1-12A0A0C4DH73 117 aa1.72□□□□□ -2.13
SCFD1-219ENST00000556413 A0A1B0GTI1 187 aa1.72□□□□□ -2.13
SCFD1-219ENST00000556413 TMEM269A0A1B0GVZ9 245 aa1.72□□□□□ -2.13
SCFD1-219ENST00000556413 LOC107986453A0A1B0GWG9 222 aa1.72□□□□□ -2.13
SCFD1-219ENST00000556413 ARRDC5A6NEK1 342 aa1.72□□□□□ -2.13
SCFD1-219ENST00000556413 TMEM210A6NLX4 147 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms