RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 RER1O15258 196 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 LDB3O75112 727 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 GRPP07492 148 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 PFN1P07737 140 aaKnown RBP7.49□□□□□ -1.21
VPS13D-212ENST00000543766 GATA2P23769 480 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-212ENST00000543766 GALR1P47211 349 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 HERV-K104P61576 105 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 HERVK_113P63121 156 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 STPG1Q5TH74 334 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 CEACAM19Q7Z692 300 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 TMEM86BQ8N661 226 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 JPT2Q9H910 190 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 TP73-AS1Q9UF72 201 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 DENND4CQ5VZ89 1909 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 SVILO95425 2214 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 IGLV3-10A0A075B6K4 115 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 TRBV6-7A0A0A0MS04 114 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 RBFOX3A6NFN3 312 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 POLR2LP62875 67 aaKnown RBP7.48□□□□□ -1.21
VPS13D-212ENST00000543766 LTBQ06643 244 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 C8orf44Q96CB5 159 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 DCBLD2Q96PD2 775 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 DERL3Q96Q80 235 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 SLC17A9Q9BYT1 436 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 A0A087WUU8 490 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 MS4A18H0YCH9 400 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 NUPR1O60356 82 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 CELA2BP08218 269 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-212ENST00000543766 PIRTP0C851 137 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 ACVRL1P37023 503 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 HOGA1Q86XE5 327 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 SCGB1C1Q8TD33 95 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF501Q96CX3 271 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-212ENST00000543766 TM2D2Q9BX73 214 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 CSRP1P21291 193 aaKnown RBP7.48□□□□□ -1.21
VPS13D-212ENST00000543766 RPS11P62280 158 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS13D-212ENST00000543766 LIAT1Q6ZQX7 453 aa7.48□□□□□ -1.21
VPS13D-212ENST00000543766 RPL27P61353 136 aaKnown RBP7.47□□□□□ -1.21
VPS13D-212ENST00000543766 SLC35A1P78382 337 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 DIAPH2-AS1Q14236 149 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 OR1C1Q15619 314 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 Q6AWC8 147 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 LCN12Q6JVE5 192 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 AMELYQ99218 206 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 EGLN3Q9H6Z9 239 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 MTFP1Q9UDX5 166 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 CEACAM18A8MTB9 384 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 EPPINO95925 133 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 HHEXQ03014 270 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 TRIP6Q15654 476 aaKnown RBP7.47□□□□□ -1.21
VPS13D-212ENST00000543766 FRG2Q64ET8 278 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 TXNDC8Q6A555 127 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 CYB561D1Q8N8Q1 229 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 OR4F5Q8NH21 305 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 OR1F12Q8NHA8 337 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 TMEM170AQ8WVE7 144 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 FRG2BQ96QU4 278 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 HLA-DQA2P01906 255 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 CRISP2P16562 243 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 LMO1P25800 156 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 RPL13AP40429 203 aaKnown RBP7.47□□□□□ -1.21
VPS13D-212ENST00000543766 TMEM50BP56557 158 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 FBXW4P57775 412 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 SMIM11AP58511 58 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 GOLT1AQ6ZVE7 132 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 PPP1R32Q7Z5V6 425 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 PARP11Q9NR21 331 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 TTC3P53804 2025 aa7.47□□□□□ -1.21
VPS13D-212ENST00000543766 A0A1W2PPK0 400 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 hADV38S2A0JD32 116 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 C9orf118A6NHY6 69 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF253O75346 499 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 C1QL1O75973 258 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 BLVRBP30043 206 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF93P35789 620 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-212ENST00000543766 Q6ZSR3 168 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 LINC00336Q6ZUF6 198 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 SPEM1Q8N4L4 309 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 RPS4Y2Q8TD47 263 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF442Q9H7R0 627 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF581Q9P0T4 197 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-212ENST00000543766 LTBP2Q14767 1821 aa7.46□□□□□ -1.21
VPS13D-212ENST00000543766 PTGESO14684 152 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 GPR137BO60478 399 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 CTGFP29279 349 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 TMEM219Q86XT9 240 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 C8orf31Q8N9H6 132 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 DOK4Q8TEW6 326 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 PRELID3AQ96N28 172 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 ADOQ96SZ5 270 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 CHST6Q9GZX3 395 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 OR10A2Q9H208 303 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 CUL9Q8IWT3 2517 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 A0A087WWC5 75 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 NPIPB6E9PJ23 425 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 IL3P08700 152 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 NHLRC4P0CG21 123 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-212ENST00000543766 FGF6P10767 208 aa7.46□□□□□ -1.22
VPS13D-212ENST00000543766 PTHLHP12272 177 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms