RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 ZNF695Q8IW36 515 aa17.72■□□□□ 0.43
SFSWAP-204ENST00000535399 MMD2Q8IY49 270 aa17.72■□□□□ 0.43
SFSWAP-204ENST00000535399 KLHL30-AS1Q8NEE0 82 aa17.72■□□□□ 0.43
SFSWAP-204ENST00000535399 MRGPRFQ96AM1 343 aa17.72■□□□□ 0.43
SFSWAP-204ENST00000535399 THAP7Q9BT49 309 aaPredicted RBP17.72■□□□□ 0.43
SFSWAP-204ENST00000535399 NUDT19A8MXV4 375 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 NQO2P16083 231 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 PTBP1P26599 531 aaKnown RBP eCLIP17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 S100GP29377 79 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 RAB9AP51151 201 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 PPP5CP53041 499 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 RND3P61587 244 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 SCGB2B2Q4G0G5 96 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 TMEM65Q6PI78 240 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 ETV3LQ6ZN32 361 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 C8orf86Q6ZUL3 223 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 TBC1D26Q86UD7 250 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 OR5M8Q8NGP6 311 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 TRIM63Q969Q1 353 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 AIFM2Q9BRQ8 373 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 SLC2A9Q9NRM0 540 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 BET1LQ9NYM9 111 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 COMMD9Q9P000 198 aa17.71■□□□□ 0.43
SFSWAP-204ENST00000535399 MSGN1A6NI15 193 aa17.7■□□□□ 0.42
SFSWAP-204ENST00000535399 PI3P19957 117 aa17.7■□□□□ 0.42
SFSWAP-204ENST00000535399 SLC6A1P30531 599 aa17.7■□□□□ 0.42
SFSWAP-204ENST00000535399 C10orf55Q5SWW7 151 aa17.7■□□□□ 0.42
SFSWAP-204ENST00000535399 OR4A47Q6IF82 309 aa17.7■□□□□ 0.42
SFSWAP-204ENST00000535399 CASTOR1Q8WTX7 329 aa17.7■□□□□ 0.42
SFSWAP-204ENST00000535399 SRSF12Q8WXF0 261 aaKnown RBP17.7■□□□□ 0.42
SFSWAP-204ENST00000535399 ZNF486Q96H40 463 aaPredicted RBP17.7■□□□□ 0.42
SFSWAP-204ENST00000535399 DISC1C4P0D8 188 aa17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 ACTL6BO94805 426 aa17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 IL6RP08887 468 aaPredicted RBP17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 LPAR6P43657 344 aa17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 Q8N402 240 aa17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 ZNF491Q8N8L2 437 aa17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 OR13C8Q8NGS7 320 aa17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 OR4A5Q8NH83 315 aa17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 TMEM68Q96MH6 324 aa17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 FAM212BQ9NTI7 297 aaPredicted RBP17.69■□□□□ 0.42
SFSWAP-204ENST00000535399 MPPED1O15442 326 aa17.68■□□□□ 0.42
SFSWAP-204ENST00000535399 SPANXN2Q5MJ10 180 aa17.68■□□□□ 0.42
SFSWAP-204ENST00000535399 OR5T1Q8NG75 326 aa17.68■□□□□ 0.42
SFSWAP-204ENST00000535399 MARCH1Q8TCQ1 289 aa17.68■□□□□ 0.42
SFSWAP-204ENST00000535399 UBE2E2Q96LR5 201 aa17.68■□□□□ 0.42
SFSWAP-204ENST00000535399 GNB4Q9HAV0 340 aa17.68■□□□□ 0.42
SFSWAP-204ENST00000535399 PF4P02776 101 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 MAS1LP35410 378 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 PIGPP57054 158 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 KLF9Q13886 244 aaPredicted RBP17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 WFDC9Q8NEX5 89 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 OR51S1Q8NGJ8 323 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 ZFAND1Q8TCF1 268 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 C4orf3Q8WVX3 66 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 RAX2Q96IS3 184 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 PHB2Q99623 299 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 SRRQ9GZT4 340 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 HRASLSQ9HDD0 168 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 TMEM140Q9NV12 185 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 SLC2A8Q9NY64 477 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 VSIG4Q9Y279 399 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 NOTCH3Q9UM47 2321 aa17.67■□□□□ 0.42
SFSWAP-204ENST00000535399 TRAV3A0A0B4J244 114 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 A0A1B0GW64 132 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 A6NHS1 94 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 UPK2O00526 184 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 CTSDP07339 412 aaPredicted RBP17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 APELAP0DMC3 54 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 RPA2P15927 270 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 HLA-GP17693 338 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 MYCNOSP40205 109 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 ECI1P42126 302 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 RPL8P62917 257 aaKnown RBP17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 DMBX1Q8NFW5 382 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 MS4A10Q96PG2 267 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 DUX3Q96PT4 197 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 P2RX4Q99571 388 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 SPIN2AQ99865 258 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 PRRT1Q99946 306 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 SPIN2BQ9BPZ2 258 aa17.66■□□□□ 0.42
SFSWAP-204ENST00000535399 MARCH11A6NNE9 402 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 TEX22C9J3V5 150 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 E7EUB6 86 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 H3BUA1 57 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 CCL24O00175 119 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 MYOD1P15172 320 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 RPL27AP46776 148 aaKnown RBP17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 ERVK-16P61578 105 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 DEFB136Q30KP8 78 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 CADM3Q8N126 398 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 LINC00482Q8N8I6 264 aa17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 ADAD2Q8NCV1 583 aaKnown RBP17.65■□□□□ 0.42
SFSWAP-204ENST00000535399 NOTCH1P46531 2555 aa17.64■□□□□ 0.41
SFSWAP-204ENST00000535399 I3L521 148 aa17.64■□□□□ 0.41
SFSWAP-204ENST00000535399 BRI3O95415 125 aa17.64■□□□□ 0.41
SFSWAP-204ENST00000535399 KRASP01116 189 aa17.64■□□□□ 0.41
SFSWAP-204ENST00000535399 IGKV1-39P01597 117 aa17.64■□□□□ 0.41
SFSWAP-204ENST00000535399 IGKV1D-39P04432 117 aa17.64■□□□□ 0.41
SFSWAP-204ENST00000535399 CD40LGP29965 261 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms