RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 ZIC4Q8N9L1 334 aa13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 PLXNA1Q9UIW2 1896 aa13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 SNRNP200O75643 2136 aaKnown RBP13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 ZG16O60844 167 aa13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 REG1AP05451 166 aa13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 RNF224P0DH78 156 aa13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 OR8A1Q8NGG7 326 aa13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 RGP1Q92546 391 aaPredicted RBP13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 REPIN1Q9BWE0 567 aaKnown RBP13.79□□□□□ -0.2
PCDHA3-201ENST00000522353 IQCF6A8MYZ5 107 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 SMIM6P0DI80 62 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 CD81P60033 236 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 IGKV3D-15A0A087WSY6 115 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 NDUFB4O95168 129 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 IGKV3-15P01624 115 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 HKR1P10072 659 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 AQP10Q96PS8 301 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 LINC00312Q9Y6C7 94 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 NPIPB3Q92617 1050 aa13.78□□□□□ -0.2
PCDHA3-201ENST00000522353 KBTBD11-OT1A0A1B0GTJ5 212 aa13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 A6NDN8 102 aa13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 C12orf77C9JDV5 145 aa13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 CX3CL1P78423 397 aa13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 LBHQ53QV2 105 aaPredicted RBP13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 ZNF841Q6ZN19 808 aa13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 OR51M1Q9H341 326 aa13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 IL4P05112 153 aa13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 IBA57Q5T440 356 aaKnown RBP13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 GATAD1Q8WUU5 269 aa13.77□□□□□ -0.2
PCDHA3-201ENST00000522353 STAG3L2P0CL84 134 aa13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 MRPL32Q9BYC8 188 aaKnown RBP13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 RBBP6Q7Z6E9 1792 aaKnown RBP13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 M0QZK8 103 aa13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 IGKV1D-33P01593 117 aa13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 IGKV1-33P01594 117 aa13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 NAT1P18440 290 aa13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 RPS11P62280 158 aaKnown RBP eCLIP13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 ZNF818PQ6ZRF7 136 aa13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 SMIM8Q96KF7 97 aa13.77□□□□□ -0.21
PCDHA3-201ENST00000522353 WNK3Q9BYP7 1800 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 M0R3E3 92 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 DLX6P56179 175 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 TBR1Q16650 682 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 FBXL15Q9H469 300 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 METRNQ9UJH8 293 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 ZFP30Q9Y2G7 519 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 IGLV3-32A0A0A0MS00 114 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 GGCTO75223 188 aaKnown RBP13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 ANOS1P23352 680 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 FAM201AQ5SY85 155 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 ASPHD2Q6ICH7 369 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 UNQ6494/PRO21346Q6UXR6 183 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 LHFPL5Q8TAF8 219 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 DSCR9P59020 149 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 PPP1R27Q86WC6 154 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 RTN4RQ9BZR6 473 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 SEMA5BQ9P283 1151 aa13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 BRCA1P38398 1863 aaKnown RBP13.76□□□□□ -0.21
PCDHA3-201ENST00000522353 A0A0B4J293 547 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 CD74P04233 296 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 IFITM2Q01629 132 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 VKORC1L1Q8N0U8 176 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 C5orf66Q9H5L9 145 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 IFITM10A6NMD0 228 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 MOSP00540 346 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 RPL39P5Q59GN2 51 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 THBDP07204 575 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 CKS2P33552 79 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 FBXL7Q9UJT9 491 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 A0A087X0M5 115 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 IGHV3-35A0A0C4DH35 117 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 A0A1B0GX30 115 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 IL18BPO95998 194 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 TRGC1P0CF51 173 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 FAM159AQ6UWV7 190 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 GPHA2Q96T91 129 aa13.75□□□□□ -0.21
PCDHA3-201ENST00000522353 HLA-DQA1P01909 254 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 NMBP08949 121 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 CD99P14209 185 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 TIMP3P35625 211 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 HIST1H1AQ02539 215 aaPredicted RBP13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 WDR25Q64LD2 544 aaPredicted RBP13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 OR1N2Q8NGR9 330 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 SBF2Q86WG5 1849 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 ZNF660Q6AZW8 331 aaPredicted RBP13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 NABP2Q9BQ15 211 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 ATG101Q9BSB4 218 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 PRSS22Q9GZN4 317 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 MOB4Q9Y3A3 225 aa13.74□□□□□ -0.21
PCDHA3-201ENST00000522353 COL6A6A6NMZ7 2263 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 IGKV1D-43A0A0B4J1Z2 117 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 CLDND2Q8NHS1 167 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 ARPC1AQ92747 370 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 TM2D1Q9BX74 207 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 AICDAQ9GZX7 198 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 DEPPQ9NTK1 212 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 C21orf62Q9NYP8 219 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 SAPCD1Q5SSQ6 148 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 PEAR1Q5VY43 1037 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms