RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ALOX5APP20292 161 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 MPZP25189 248 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 DCTDP32321 178 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 AMTP48728 403 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 ATP1B3P54709 279 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 C2orf76Q3KRA6 126 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 MIDNQ504T8 468 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 FAM120AOSQ5T036 256 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 UNQ9370/PRO34162Q6UXP9 181 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 HEPN1Q6WQI6 88 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 MUC20Q8N307 709 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 PTX4Q96A99 478 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 ZNF442Q9H7R0 627 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 HRASLSQ9HDD0 168 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 IL36RNQ9UBH0 155 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 RPL36Q9Y3U8 105 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 TRAV30A0A087WSZ9 112 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 CEACAM18A8MTB9 384 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 OVOL3O00110 214 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 SYNGR1O43759 233 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 NXPH3O95157 252 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 MAS1P04201 325 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 TMEM225BP0DP42 221 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 GATA3P23771 443 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 FAUP35544 74 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 CLDN12P56749 244 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 GLDNQ6ZMI3 551 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 SLC25A26Q70HW3 274 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 RNF144BQ7Z419 303 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 TRAPPC6BQ86SZ2 158 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 LINC01551Q86U37 167 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 BIVMQ86UB2 503 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 GPX7Q96SL4 187 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 PPIAL4EA0A075B759 164 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 TRAV40A0A0B4J280 105 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 ZAR1LA6NP61 321 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 PPIAL4DF5H284 164 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 H7C417 338 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 MFNGO00587 321 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 GABRPO00591 440 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 PPIAL4FP0DN26 164 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 ZNF154Q13106 437 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 RUSC1-AS1Q66K80 236 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 NUP37Q8NFH4 326 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 ZDHHC16Q969W1 377 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 ANAPC13Q9BS18 74 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 FNDC4Q9H6D8 234 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 MOB1AQ9H8S9 216 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 ADGRL4Q9HBW9 690 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 MRM2Q9UI43 246 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 FUT9Q9Y231 359 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 TENM1Q9UKZ4 2725 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 LOC107986453A0A1B0GWG9 222 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 OR2T8A6NH00 312 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 PPP5D1E7EU14 171 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 SIRPB1O00241 398 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 PLPP2O43688 288 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 NRASP01111 189 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 ESDP10768 282 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 EGR1P18146 543 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 MTCP1P56278 107 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 SPATA45Q537H7 98 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 CCDC144NLQ6NUI1 221 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 FAHD1Q6P587 224 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 MOB1BQ7L9L4 216 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 CEACAM19Q7Z692 300 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 TMEM183AQ8IXX5 376 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 PNKDQ8N490 385 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 OR1B1Q8NGR6 318 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 ABHD5Q8WTS1 349 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 NEU4Q8WWR8 484 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 HAVCR1Q96D42 359 aa6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 AK6Q9Y3D8 172 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-219ENST00000514096 G3V3Q6 166 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 TRAPPC2LH3BP13 241 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 H3BQ15 152 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 M0R2Z0 102 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 IGHMP01871 453 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 CSTBP04080 98 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 SERPINE2P07093 398 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 IGHV4-31P0DP07 118 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 WDR38Q5JTN6 314 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 ZNF562Q6V9R5 426 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 FAM213BQ8TBF2 198 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 BLNKQ8WV28 456 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 BORCS8Q96FH0 119 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 NIPSNAP3BQ9BS92 247 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 PNRC2Q9NPJ4 139 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 NPIPB5A8MRT5 1133 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 XRCC3O43542 346 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 BRI3O95415 125 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 AVPP01185 164 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 SRMP19623 302 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 ZFP36P26651 326 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 GRB2P62993 217 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 LYG2Q86SG7 212 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 BCL6BQ8N143 479 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 FER1L6-AS1Q8NA97 138 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 RNF133Q8WVZ7 376 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms