RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 GRPEL2Q8TAA5 225 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 C16orf95Q9H693 158 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 PALMDQ9NP74 551 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 IGHV7-81A0A0B4J1V7 117 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 SFT2D2O95562 160 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 IGKV1-39P01597 117 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 HLA-AP01891 365 aaKnown RBP11.84□□□□□ -0.51
NUP54-213ENST00000513352 IGKV1D-39P04432 117 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 CRYGBP07316 175 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 OR4E1P0C645 316 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 UBE2MP61081 183 aaKnown RBP11.84□□□□□ -0.51
NUP54-213ENST00000513352 SUPT4H1P63272 117 aaKnown RBP11.84□□□□□ -0.51
NUP54-213ENST00000513352 CX3CL1P78423 397 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 TMEM187Q14656 261 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 FXYD3Q14802 87 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 PRSS8Q16651 343 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 PLET1Q6UQ28 207 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 MMD2Q8IY49 270 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 PUSL1Q8N0Z8 303 aaKnown RBP11.84□□□□□ -0.51
NUP54-213ENST00000513352 LGI3Q8N145 548 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 Q8N2B8 174 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 LINC01006Q8NI28 216 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 GLYATL2Q8WU03 294 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 ARPC1AQ92747 370 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 RBPMSQ93062 196 aaKnown RBP11.84□□□□□ -0.51
NUP54-213ENST00000513352 RRNAD1Q96FB5 475 aaKnown RBP11.84□□□□□ -0.51
NUP54-213ENST00000513352 GALNT14Q96FL9 552 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 ZNF430Q9H8G1 570 aaPredicted RBP11.84□□□□□ -0.51
NUP54-213ENST00000513352 BET1LQ9NYM9 111 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 LINC00527Q9UJ94 153 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 RNF114Q9Y508 228 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 TNCP24821 2201 aa11.84□□□□□ -0.51
NUP54-213ENST00000513352 TMEM89A2RUT3 159 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 CLPSL1A2RUU4 121 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 LINC01548A6NM66 108 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 ATP6V0E1O15342 81 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 RBMXL2O75526 392 aaKnown RBP11.83□□□□□ -0.52
NUP54-213ENST00000513352 SNAPC5O75971 98 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 IGHG2P01859 326 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 SRPXP78539 464 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 POU2AF1Q16633 256 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 LYG2Q86SG7 212 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 SELENOHQ8IZQ5 122 aaKnown RBP11.83□□□□□ -0.52
NUP54-213ENST00000513352 OR4A5Q8NH83 315 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 LHFPL5Q8TAF8 219 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 TMEM167AQ8TBQ9 72 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 SEC22AQ96IW7 307 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 NOL4LQ96MY1 436 aaPredicted RBP11.83□□□□□ -0.52
NUP54-213ENST00000513352 PHB2Q99623 299 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 OR51J1Q9H342 316 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 NSG2Q9Y328 171 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 BOLA1Q9Y3E2 137 aa11.83□□□□□ -0.52
NUP54-213ENST00000513352 TRAV3A0A0B4J244 114 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 A0A1B0GUS0 222 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 C9orf170A2RU37 121 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 AP4M1O00189 453 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 UPK2O00526 184 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 CDS2O95674 445 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 OR2B8PP59922 312 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 RPL8P62917 257 aaKnown RBP11.82□□□□□ -0.52
NUP54-213ENST00000513352 NDPQ00604 133 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 ECSCRQ19T08 205 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 AWAT1Q58HT5 328 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 C10orf55Q5SWW7 151 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 ZNF562Q6V9R5 426 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 KLHDC1Q8N7A1 406 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 SLC35G3Q8N808 338 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 FAM103A1Q9BTL3 118 aaKnown RBP11.82□□□□□ -0.52
NUP54-213ENST00000513352 SERTAD4Q9NUC0 356 aa11.82□□□□□ -0.52
NUP54-213ENST00000513352 PTTG1O95997 202 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 IGKV1-5P01602 117 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 OPN1MWP04001 364 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 OR9G9P0C7N8 305 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 OPN1MW2P0DN77 364 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 OPN1MW3P0DN78 364 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 SPNP16150 400 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 HLA-GP17693 338 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 VDAC1P21796 283 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 DHRS2Q13268 280 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 IZUMO4Q1ZYL8 232 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 ANKRD55Q3KP44 614 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 CENPVQ7Z7K6 275 aaPredicted RBP11.81□□□□□ -0.52
NUP54-213ENST00000513352 DUSP18Q8NEJ0 188 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 OR52B4Q8NGK2 314 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 OR4A16Q8NH70 328 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 COQ8AQ8NI60 647 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 IL22RA2Q969J5 263 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 SEC22CQ9BRL7 303 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 WSB1Q9Y6I7 421 aa11.81□□□□□ -0.52
NUP54-213ENST00000513352 INMT-MINDY4F8WBC2 141 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 APELAP0DMC3 54 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 MYOD1P15172 320 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 MAS1LP35410 378 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 RPL27AP46776 148 aaKnown RBP11.8□□□□□ -0.52
NUP54-213ENST00000513352 COMPP49747 757 aaPredicted RBP11.8□□□□□ -0.52
NUP54-213ENST00000513352 MRGPRG-AS1Q2M3A8 158 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 RGS21Q2M5E4 152 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 UNQ5815/PRO19632Q6UWF5 114 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 C12orf54Q6X4T0 127 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 STPG2Q8N412 459 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms