RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SLC25A38Q96DW6 304 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 TAS2R8Q9NYW2 309 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 DYNC2H1Q8NCM8 4307 aaKnown RBP12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 TRAV18A0A075B6X5 111 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 A0A0A6YYH2 397 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 IZUMO1RA6ND01 250 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 A6NJ64 397 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 NPIPB5A8MRT5 1133 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 OR2J3O76001 311 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 IL6RP08887 468 aaPredicted RBP12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 KIR2DS2P43631 304 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 ARPC4P59998 168 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 MSMO1Q15800 293 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 IDNKQ5T6J7 187 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 KCTD12Q96CX2 325 aaKnown RBP12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 SPATA25Q9BR10 227 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 RNF167Q9H6Y7 350 aa12.57□□□□□ -0.4
CCDC28B-204ENST00000469003 LOC100506127A0A0U1RQW1 187 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 DPPA5A6NC42 116 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 E7EUB6 86 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 HRASP01112 189 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 ZNF735P0CB33 412 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 FCGR2CP31995 323 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 HAGHQ16775 308 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 ADAMTSL5Q6ZMM2 481 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 HOGA1Q86XE5 327 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 GVQW1Q8N7I0 195 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 SECTM1Q8WVN6 248 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 FYTTD1Q96QD9 318 aaKnown RBP12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 TUBA4BQ9H853 241 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 PALMDQ9NP74 551 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 SLC2A9Q9NRM0 540 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 DMRT1Q9Y5R6 373 aa12.56□□□□□ -0.4
CCDC28B-204ENST00000469003 A0A1B0GW64 132 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 PPP5D1E7EU14 171 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 GGCTO75223 188 aaKnown RBP12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 CRYGCP07315 174 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 LAX1Q8IWV1 398 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 ZBTB34Q8NCN2 500 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 OR13F1Q8NGS4 319 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 ISOC1Q96CN7 298 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 GPHA2Q96T91 129 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 EDA2RQ9HAV5 297 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 CCL28Q9NRJ3 127 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 FBXL7Q9UJT9 491 aa12.55□□□□□ -0.4
CCDC28B-204ENST00000469003 TNFSF12O43508 249 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 TMEM127O75204 238 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 PPYP01298 95 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 PTHLHP12272 177 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 RPL8P62917 257 aaKnown RBP12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 KLK9Q2XQG4 91 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 CD300EQ496F6 205 aaPredicted RBP12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 C19orf35Q6ZS72 473 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 SSX9Q7RTT3 188 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 OR4A5Q8NH83 315 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 FANCD2OSQ96PS1 177 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 AIFM2Q9BRQ8 373 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 AUNIPQ9H7T9 357 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 DIABLOQ9NR28 239 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 BET1LQ9NYM9 111 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 KLK9Q9UKQ9 250 aa12.54□□□□□ -0.4
CCDC28B-204ENST00000469003 LGALS9O00182 355 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 RBFOX2O43251 390 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 DHFRP00374 187 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 AREGP15514 252 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 CTRB1P17538 263 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 HLA-GP17693 338 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 PSMB6P28072 239 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 CBX5P45973 191 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 CD81P60033 236 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 NEDD8Q15843 81 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 DEFB114Q30KQ6 69 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 TIMM50Q3ZCQ8 353 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 CTRB2Q6GPI1 263 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 SPAG16Q8N0X2 631 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 DYNLRB2Q8TF09 96 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 SLC5A7Q9GZV3 580 aa12.53□□□□□ -0.4
CCDC28B-204ENST00000469003 C2orf70A6NJV1 201 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 ZNF785A8K8V0 405 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 NDUFB8O95169 186 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 OR2C1O95371 312 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 HLA-AP01891 365 aaKnown RBP12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 FOLR2P14207 255 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 HIST1H1BP16401 226 aaKnown RBP12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 CATR1Q13166 79 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 KCTD21Q4G0X4 260 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 OR4A47Q6IF82 309 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 GPHB5Q86YW7 130 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 CCDC140Q96MF4 163 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 NEURL2Q9BR09 285 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 PLEKHA3Q9HB20 300 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 SLC2A8Q9NY64 477 aa12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 TECRQ9NZ01 308 aaKnown RBP12.52□□□□□ -0.41
CCDC28B-204ENST00000469003 SACSQ9NZJ4 4579 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 CGB1A6NKQ9 187 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 SULT1C2O00338 296 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 TPPPO94811 219 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 HPRT1P00492 218 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 IGHV3-23P01764 117 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 IFNA6P05013 189 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms