RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 H2BFSP57053 126 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 RRAS2P62070 204 aaPredicted RBP4.74□□□□□ -1.65
USP39-213ENST00000467885 ID3Q02535 119 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 PJVKQ0ZLH3 352 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 RTL8BQ17RB0 113 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 AARDQ4LEZ3 155 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 Q5BKY6 102 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 CXorf66Q5JRM2 361 aaPredicted RBP4.74□□□□□ -1.65
USP39-213ENST00000467885 TEX29Q8N6K0 151 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 COQ8AQ8NI60 647 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 R3HDM4Q96D70 268 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 RBM14Q96PK6 669 aaKnown RBP4.74□□□□□ -1.65
USP39-213ENST00000467885 PHB2Q99623 299 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 NEURL2Q9BR09 285 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 RNF126Q9BV68 326 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 KRTAP4-7Q9BYR0 210 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 MED28Q9H204 178 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 SIGLEC9Q9Y336 463 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 TMED3Q9Y3Q3 217 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 MMP24Q9Y5R2 645 aa4.74□□□□□ -1.65
USP39-213ENST00000467885 ZNF469Q96JG9 3925 aaPredicted RBP4.74□□□□□ -1.65
USP39-213ENST00000467885 FLNAP21333 2647 aaKnown RBP4.73□□□□□ -1.65
USP39-213ENST00000467885 TEX50A0A1B0GTY4 177 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 A0A1B0GU03 582 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 C13orf42A0A1B0GVH6 325 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 DUXBA0A1W2PPF3 345 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 LINC01548A6NM66 108 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 INAFM1C9JVW0 142 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 RRHO14718 337 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 SHOXO15266 292 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 CRLF1O75462 422 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 KBTBD11O94819 623 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 NDUFA3O95167 84 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 IGHV4-59P01825 116 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 APOA2P02652 100 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 RPLP1P05386 114 aaKnown RBP4.73□□□□□ -1.65
USP39-213ENST00000467885 OR9G9P0C7N8 305 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 EGR2P11161 476 aaPredicted RBP4.73□□□□□ -1.65
USP39-213ENST00000467885 SLC25A6P12236 298 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 SRP14P37108 136 aaKnown RBP4.73□□□□□ -1.65
USP39-213ENST00000467885 BCAP31P51572 246 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 ARHGDIBP52566 201 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 UBE2KP61086 200 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 SRPXP78539 464 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 SSBP2P81877 361 aaPredicted RBP4.73□□□□□ -1.65
USP39-213ENST00000467885 LRRC75BQ2VPJ9 315 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 LCE1DQ5T752 114 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 OR4A47Q6IF82 309 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 Q6ZS46 218 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 SSX9Q7RTT3 188 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 SIGLECL1Q8N7X8 197 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 Q8N9W7 124 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 OR8H1Q8NGG4 311 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 OR4S2Q8NH73 311 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 TMEM167AQ8TBQ9 72 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 ST6GAL2Q96JF0 529 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 C2orf50Q96LR7 162 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 AIFM2Q9BRQ8 373 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.73□□□□□ -1.65
USP39-213ENST00000467885 LIN7CQ9NUP9 197 aaKnown RBP4.73□□□□□ -1.65
USP39-213ENST00000467885 BET1LQ9NYM9 111 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 COMMD9Q9P000 198 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 MGAT4CQ9UBM8 478 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 TCF19Q9Y242 345 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 NSG2Q9Y328 171 aa4.73□□□□□ -1.65
USP39-213ENST00000467885 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.73□□□□□ -1.657e-7■■■■■ 34.1
USP39-213ENST00000467885 WNK2Q9Y3S1 2297 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 SVEP1Q4LDE5 3571 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 A0A1B0GW64 132 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 CGB1A6NKQ9 187 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 MARCH11A6NNE9 402 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 H3BUX3 64 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 CCSO14618 274 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 HOXA3O43365 443 aaPredicted RBP4.72□□□□□ -1.65
USP39-213ENST00000467885 SSNA1O43805 119 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 SLC25A17O43808 307 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 ATG12O94817 140 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 IFNA21P01568 189 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 SAA1P0DJI8 122 aaPredicted RBP4.72□□□□□ -1.65
USP39-213ENST00000467885 MYOD1P15172 320 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 PAX9P55771 341 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 HSPE1P61604 102 aaKnown RBP4.72□□□□□ -1.65
USP39-213ENST00000467885 BLCAPP62952 87 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 CX3CL1P78423 397 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 HES1Q14469 280 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 LY6EQ16553 131 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 PRSS8Q16651 343 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 C5orf64Q2M2E5 130 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 PDLIM3Q53GG5 364 aaPredicted RBP4.72□□□□□ -1.65
USP39-213ENST00000467885 GSG1LQ6UXU4 331 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 ZNF562Q6V9R5 426 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 H2BFWTQ7Z2G1 175 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 PPP1R27Q86WC6 154 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 FAM219AQ8IW50 185 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 FAM71E2Q8N5Q1 922 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 ZBTB8BQ8NAP8 495 aaPredicted RBP4.72□□□□□ -1.65
USP39-213ENST00000467885 DMBX1Q8NFW5 382 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 OR4D5Q8NGN0 318 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 OR4A5Q8NH83 315 aa4.72□□□□□ -1.65
USP39-213ENST00000467885 RRNAD1Q96FB5 475 aaKnown RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms