RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DSCR9P59020 149 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 NCR3LG1Q68D85 454 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 CLEC2AQ6UVW9 174 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 ZNF833PQ6ZTB9 187 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 H2BFWTQ7Z2G1 175 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 KIR3DL3Q8N743 410 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 ZNF525Q8N782 197 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 SCGB1C1Q8TD33 95 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 CLEC7AQ9BXN2 247 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 ONECUT1Q9UBC0 465 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 HRNRQ86YZ3 2850 aaPredicted RBP14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 A1L4Q6 167 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 S1PR2O95136 353 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 IGHV2-5P01817 119 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 NQO2P16083 231 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 PPT1P50897 306 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 ATP5J2P56134 94 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 ZNF295-AS1Q8N0V1 137 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 OR13D1Q8NGV5 346 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 HSPB7Q9UBY9 170 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 FLNCQ14315 2725 aa14.86□□□□□ -0.03
CCDC88C-203ENST00000389856 C9JQL5 133 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 KRASP01116 189 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 CTRB1P17538 263 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 FHITP49789 147 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 ZNF137PP52743 207 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 SERF2P84101 59 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 ATP6V1FQ16864 119 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 CTRB2Q6GPI1 263 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 SLC25A24Q6NUK1 477 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 C1orf122Q6ZSJ8 110 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 TMEM217Q8N7C4 229 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 DDB2Q92466 427 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 FAM168AQ92567 244 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 R3HDM4Q96D70 268 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 CIB3Q96Q77 187 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 ZNF251Q9BRH9 671 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 TUBA4BQ9H853 241 aa14.85□□□□□ -0.03
CCDC88C-203ENST00000389856 PROP1O75360 226 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 HRASP01112 189 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 PAX1P15863 534 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 TNFRSF9Q07011 255 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 BEND2Q8NDZ0 799 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 PCGF1Q9BSM1 259 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 IGHV2-26A0A0B4J1V2 119 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 MARCH11A6NNE9 402 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 C22orf46C9J442 243 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 FOXH1O75593 365 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 PLA2G2AP14555 144 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 G6PCP35575 357 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 UBE2KP61086 200 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 RHEBQ15382 184 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 SPSB3Q6PJ21 355 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 C11orf42Q8N5U0 333 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 C15orf54Q8N8G6 183 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 BPESC1Q9GZL8 116 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 TIMM9Q9Y5J7 89 aa14.84□□□□□ -0.03
CCDC88C-203ENST00000389856 USF3Q68DE3 2245 aa14.83□□□□□ -0.03
CCDC88C-203ENST00000389856 RBFOX3A6NFN3 312 aa14.83□□□□□ -0.04
CCDC88C-203ENST00000389856 RAB13P51153 203 aa14.83□□□□□ -0.04
CCDC88C-203ENST00000389856 SMUG1Q53HV7 270 aa14.83□□□□□ -0.04
CCDC88C-203ENST00000389856 TMEM88Q6PEY1 159 aa14.83□□□□□ -0.04
CCDC88C-203ENST00000389856 TMEM14EPQ6UXP3 125 aa14.83□□□□□ -0.04
CCDC88C-203ENST00000389856 PINX1Q96BK5 328 aaKnown RBP14.83□□□□□ -0.04
CCDC88C-203ENST00000389856 SLC35D1Q9NTN3 355 aa14.83□□□□□ -0.04
CCDC88C-203ENST00000389856 MALRD1Q5VYJ5 2156 aa14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 FASNP49327 2511 aaKnown RBP14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 MC5RP33032 325 aa14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 BRWD1-AS2P59051 145 aa14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 LRRC75BQ2VPJ9 315 aa14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 UTF1Q5T230 341 aa14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 TGIF2LXQ8IUE1 241 aa14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 CBLN2Q8IUK8 224 aa14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 ZNF383Q8NA42 475 aa14.82□□□□□ -0.04
CCDC88C-203ENST00000389856 SPTAN1Q13813 2472 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 RBMXL2O75526 392 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 NXPH3O95157 252 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 HSPB1P04792 205 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 CT45A6P0DMU7 189 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 CT45A5P0DMU8 189 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 CT45A7P0DMV0 189 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 TMEM267Q0VDI3 215 aaPredicted RBP14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 HLA-DRB5Q30154 266 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 ZNF506Q5JVG8 444 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 THNSL2Q86YJ6 484 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 LILRB2Q8N423 598 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 OR10G4Q8NGN3 311 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 CLDND2Q8NHS1 167 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 OSR1Q8TAX0 266 aaPredicted RBP14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 RBKSQ9H477 322 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 IAPPP10997 89 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 FOLR2P14207 255 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 PRTN3P24158 256 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 CEACAM3P40198 252 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 PMS2P11Q13670 270 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 SOHLH1Q5JUK2 328 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 CENPVQ7Z7K6 275 aaPredicted RBP14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 PDPNQ86YL7 162 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 OR4A16Q8NH70 328 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms