RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ATP5SQ99766 215 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 AGMATQ9BSE5 352 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 SIRPDQ9H106 197 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 GNG12Q9UBI6 72 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 MALRD1Q5VYJ5 2156 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 F8W036 122 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 RNASEK-C17orf49H0YIS7 233 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 TRIM77I1YAP6 450 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 CRLF1O75462 422 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 TSPAN15O95858 294 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 P0C879 139 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 BRWD1-AS2P59051 145 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 TMEM267Q0VDI3 215 aaPredicted RBP8.3□□□□□ -1.08
VPS53-202ENST00000389040 ZNF816Q0VGE8 651 aaPredicted RBP8.3□□□□□ -1.08
VPS53-202ENST00000389040 Q3ZCU0 254 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 MIDNQ504T8 468 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 TMEM182Q6ZP80 229 aaPredicted RBP8.3□□□□□ -1.08
VPS53-202ENST00000389040 SVBPQ8N300 66 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 OR2G3Q8NGZ4 309 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 HSD17B10Q99714 261 aaKnown RBP8.3□□□□□ -1.08
VPS53-202ENST00000389040 C19orf12Q9NSK7 152 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 ZANQ9Y493 2812 aa8.3□□□□□ -1.08
VPS53-202ENST00000389040 CR1P17927 2039 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 ZNF729A6NN14 1252 aaPredicted RBP8.29□□□□□ -1.08
VPS53-202ENST00000389040 F2RL2O00254 374 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 YPEL1O60688 119 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 DFFBO76075 338 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 S1PR2O95136 353 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 KRASP01116 189 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 CD5P06127 495 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 IAPPP10997 89 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 G6PCP35575 357 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 GPR12P47775 334 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 TAS2R30P59541 319 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 ERVFRD-1P60508 538 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 ARF6P62330 175 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 MORN2Q502X0 79 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 HEPN1Q6WQI6 88 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 COMMD1Q8N668 190 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 GNPNAT1Q96EK6 184 aaPredicted RBP8.29□□□□□ -1.08
VPS53-202ENST00000389040 YPEL2Q96QA6 119 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 NKX6-2Q9C056 277 aaPredicted RBP8.29□□□□□ -1.08
VPS53-202ENST00000389040 PSENENQ9NZ42 101 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 ONECUT1Q9UBC0 465 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 CARHSP1Q9Y2V2 147 aaKnown RBP8.29□□□□□ -1.08
VPS53-202ENST00000389040 ACANP16112 2415 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 ABCA1O95477 2261 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 CSPG4Q6UVK1 2322 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 HIVEP2P31629 2446 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 KBTBD11-OT1A0A1B0GTJ5 212 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 LINC00473A8K010 186 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 UMAD1C9J7I0 102 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 FSHBP01225 129 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 LOXL3P58215 753 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 UBE2KP61086 200 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 TAGLNQ01995 201 aaKnown RBP8.29□□□□□ -1.08
VPS53-202ENST00000389040 GUCA2BQ16661 112 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 C9orf139Q6ZV77 190 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 SEC11CQ9BY50 192 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 CALYQ9NYX4 217 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 HSPB7Q9UBY9 170 aa8.29□□□□□ -1.08
VPS53-202ENST00000389040 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.28□□□□□ -1.089e-6■■□□□ 12.8
VPS53-202ENST00000389040 SFTA3P0C7M3 94 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 CGB3P0DN86 165 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 CGB7P0DN87 165 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 SRP14P37108 136 aaKnown RBP8.28□□□□□ -1.08
VPS53-202ENST00000389040 SNCAP37840 140 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 UBE2E1P51965 193 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 DLX6P56179 175 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 TNFRSF9Q07011 255 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 C1orf229Q6ZS94 237 aaPredicted RBP8.28□□□□□ -1.08
VPS53-202ENST00000389040 C11orf42Q8N5U0 333 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 FAM213BQ8TBF2 198 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 CD300LFQ8TDQ1 290 aa8.28□□□□□ -1.08
VPS53-202ENST00000389040 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.28□□□□□ -1.08
VPS53-202ENST00000389040 INAFM1C9JVW0 142 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 RAB29O14966 203 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 IFNA5P01569 189 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 METTL15P1P0C7V9 234 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 SRD5A1P18405 259 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 DUTP33316 252 aaKnown RBP8.27□□□□□ -1.09
VPS53-202ENST00000389040 HBG1P69891 147 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 HBG2P69892 147 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 RUNX1Q01196 453 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 ZNF273Q14593 569 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 C17orf58Q2M2W7 97 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 LURAP1LQ8IV03 231 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 PUSL1Q8N0Z8 303 aaKnown RBP8.27□□□□□ -1.09
VPS53-202ENST00000389040 Q8N7P7 452 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 OR13D1Q8NGV5 346 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 TBX15Q96SF7 602 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 PCGF1Q9BSM1 259 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 RBKSQ9H477 322 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 RFNGQ9Y644 331 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 A0A087X0M5 115 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 A0A1B0GX30 115 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 C9JQL5 133 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 DNASE2O00115 360 aaPredicted RBP8.27□□□□□ -1.09
VPS53-202ENST00000389040 ITGB1BP1O14713 200 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 TSPAN4O14817 238 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms