RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PPP1R27Q86WC6 154 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 C11orf91Q3C1V1 193 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 DEFB121Q5J5C9 76 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 IFITM10A6NMD0 228 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 TNFRSF9Q07011 255 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 PI4KAP42356 2102 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 FSTP19883 344 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 OR51G1Q8NGK1 321 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 GALNT14Q96FL9 552 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 GCGP01275 180 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 UMODP07911 640 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 HOXA6P31267 233 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 LINC01587Q99440 93 aa13.23□□□□□ -0.29
PTPRF-201ENST00000359947 SCN5AQ14524 2016 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 M0R143 59 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 SIAH2O43255 324 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 EFEMP2O95967 443 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 EGR4Q05215 589 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 LINC00305Q7Z4B0 112 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 TMEM252Q8N6L7 170 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 MUC21A0A0G2JKD1 596 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 MUC21A0A140T8X8 626 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 SCGB1A1P11684 91 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 GNLYP22749 145 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 MUC21Q5SSG8 566 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 WDYHV1Q96HA8 205 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 G6PC2Q9NQR9 355 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 TCF19Q9Y242 345 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 PATJQ8NI35 1801 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 C7orf77A4D0Y5 90 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 FAM3BP58499 235 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-201ENST00000359947 GLMPQ8WWB7 406 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 CTHRC1Q96CG8 243 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 MUC1P15941 1255 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-201ENST00000359947 DMRTA2Q96SC8 542 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 VWCEQ96DN2 955 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 BRCA1P38398 1863 aaKnown RBP13.22□□□□□ -0.29
PTPRF-201ENST00000359947 IRF3Q14653 427 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 DRAM1Q8N682 238 aa13.22□□□□□ -0.29
PTPRF-201ENST00000359947 TFF1P04155 84 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 COX5BP10606 129 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 VAX1Q5SQQ9 334 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 ZNF837Q96EG3 531 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-201ENST00000359947 MYO7BQ6PIF6 2116 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 DOCK7Q96N67 2140 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 PLA2G10O15496 165 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 CRYBB3P26998 211 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 GEMIN7Q9H840 131 aaKnown RBP13.21□□□□□ -0.29
PTPRF-201ENST00000359947 STAG3L2P0CL84 134 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 SUMO2P61956 95 aaKnown RBP13.21□□□□□ -0.29
PTPRF-201ENST00000359947 OR13C6PQ8NH95 151 aa13.21□□□□□ -0.29
PTPRF-201ENST00000359947 TMEM218A2RU14 115 aa13.21□□□□□ -0.3
PTPRF-201ENST00000359947 M0R381 172 aa13.21□□□□□ -0.3
PTPRF-201ENST00000359947 OTX1P32242 354 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-201ENST00000359947 TCRBV4S1A1TA0A5B7 111 aa13.21□□□□□ -0.3
PTPRF-201ENST00000359947 TAF15Q92804 592 aaKnown RBP eCLIP13.21□□□□□ -0.36e-7■■□□□ 11.8
PTPRF-201ENST00000359947 SPTBN1Q01082 2364 aaKnown RBP13.2□□□□□ -0.3
PTPRF-201ENST00000359947 RNASE4P34096 147 aaKnown RBP13.2□□□□□ -0.3
PTPRF-201ENST00000359947 C3orf36Q3SXR2 165 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 NRXN2Q9P2S2 1712 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 ZNF708P17019 499 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 UQCRFS1P47985 274 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 AQP3Q92482 292 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 ARPC1AQ92747 370 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 TRGV2A0A075B6R0 118 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 BCL2P10415 239 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 ZFP30Q9Y2G7 519 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-201ENST00000359947 B4DEV8 164 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 ZNF79Q15937 498 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 TBR1Q16650 682 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 FAM209AQ5JX71 171 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 MRAP2Q96G30 205 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 TRBV5-5A0A0J9YX44 114 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 NRN1LQ496H8 165 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 GCSAMLQ5JQS6 135 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 Q96M66 194 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 TCF20Q9UGU0 1960 aaKnown RBP13.2□□□□□ -0.3
PTPRF-201ENST00000359947 SERF2P84101 59 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 C1QTNF12Q5T7M4 302 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 H1FOOQ8IZA3 346 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-201ENST00000359947 CBLN4Q9NTU7 201 aa13.2□□□□□ -0.3
PTPRF-201ENST00000359947 PSME4Q14997 1843 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 C17orf100A8MU93 164 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 PSG7Q13046 419 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 ZNF343Q6P1L6 599 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 A0A0G2JLM5 398 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 CCL3L1P16619 93 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 CSRP1P21291 193 aaKnown RBP13.19□□□□□ -0.3
PTPRF-201ENST00000359947 ICAM4Q14773 271 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 SAXO1Q8IYX7 474 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 TNFSF18Q9UNG2 199 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 IGKV1D-43A0A0B4J1Z2 117 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 P2RY4P51582 365 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 GCM2O75603 506 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-201ENST00000359947 HLA-DQB1P01920 261 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 C8orf88P0DMB2 117 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 SRD5A1P18405 259 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 DOCK8Q8NF50 2099 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 LOC107984156A0A0G2JMH3 177 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms