RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 HRASP01112 189 aa14.09□□□□□ -0.15
CLN3-202ENST00000355477 IL6RP08887 468 aaPredicted RBP14.09□□□□□ -0.15
CLN3-202ENST00000355477 MYOD1P15172 320 aa14.09□□□□□ -0.15
CLN3-202ENST00000355477 TTC9CQ8N5M4 171 aa14.09□□□□□ -0.15
CLN3-202ENST00000355477 GPX8Q8TED1 209 aa14.09□□□□□ -0.15
CLN3-202ENST00000355477 USMG5Q96IX5 58 aa14.09□□□□□ -0.15
CLN3-202ENST00000355477 CMTM3Q96MX0 182 aa14.09□□□□□ -0.15
CLN3-202ENST00000355477 ZNF2Q9BSG1 426 aaPredicted RBP14.09□□□□□ -0.15
CLN3-202ENST00000355477 AKIP1Q9NQ31 210 aa14.09□□□□□ -0.15
CLN3-202ENST00000355477 TRBV9A0A0B4J1U6 114 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 RBFOX2O43251 390 aaKnown RBP eCLIP14.08□□□□□ -0.16
CLN3-202ENST00000355477 GABARAPO95166 117 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 LY86O95711 162 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 SPNP16150 400 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 RORCP51449 518 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 HERV-K104P61576 105 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 RHOGP84095 191 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 DCTN2Q13561 401 aaKnown RBP14.08□□□□□ -0.16
CLN3-202ENST00000355477 KLF5Q13887 457 aaPredicted RBP14.08□□□□□ -0.16
CLN3-202ENST00000355477 GPR107Q5VW38 600 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 OR4A47Q6IF82 309 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 C19orf35Q6ZS72 473 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 SNX29P2Q8IUI4 249 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 OR5H2Q8NGV7 314 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 OR51H1Q8NH63 302 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 VSTM2AQ8TAG5 236 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 MOB3AQ96BX8 217 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 PEF1Q9UBV8 284 aaKnown RBP14.08□□□□□ -0.16
CLN3-202ENST00000355477 ADAM30Q9UKF2 790 aa14.08□□□□□ -0.16
CLN3-202ENST00000355477 SMIM31A0A1B0GVY4 71 aa14.07□□□□□ -0.16
CLN3-202ENST00000355477 ZP3P21754 424 aa14.07□□□□□ -0.16
CLN3-202ENST00000355477 HLA-DMAP28067 261 aa14.07□□□□□ -0.16
CLN3-202ENST00000355477 HRH1P35367 487 aa14.07□□□□□ -0.16
CLN3-202ENST00000355477 MAS1LP35410 378 aa14.07□□□□□ -0.16
CLN3-202ENST00000355477 RPL27AP46776 148 aaKnown RBP14.07□□□□□ -0.16
CLN3-202ENST00000355477 TAS2R46P59540 309 aa14.07□□□□□ -0.16
CLN3-202ENST00000355477 HAPLN4Q86UW8 402 aa14.07□□□□□ -0.16
CLN3-202ENST00000355477 FYTTD1Q96QD9 318 aaKnown RBP14.07□□□□□ -0.16
CLN3-202ENST00000355477 BET1LQ9NYM9 111 aa14.07□□□□□ -0.16
CLN3-202ENST00000355477 STAB2Q8WWQ8 2551 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 TRAV3A0A0B4J244 114 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 CGB1A6NKQ9 187 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 HPRT1P00492 218 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 ZNF735P0CB33 412 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 RPL8P62917 257 aaKnown RBP14.06□□□□□ -0.16
CLN3-202ENST00000355477 CATR1Q13166 79 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 OR4C12Q96R67 309 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 FXYD6Q9H0Q3 95 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 SLC2A9Q9NRM0 540 aa14.06□□□□□ -0.16
CLN3-202ENST00000355477 FAM223BA6NKX1 122 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 PGLYRP1O75594 196 aaPredicted RBP14.05□□□□□ -0.16
CLN3-202ENST00000355477 OR2J3O76001 311 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 S1PR2O95136 353 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 AREGP15514 252 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 HLA-GP17693 338 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 ALDH3B2P48448 385 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 SYNJ2BPP57105 145 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 TAS2R31P59538 309 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 ATP5G2Q06055 141 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 POU2AF1Q16633 256 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 AADACL3Q5VUY0 350 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 IL34Q6ZMJ4 242 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 FAM223AQ8IWN6 122 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 OR6F1Q8NGZ6 308 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 ELOVL1Q9BW60 279 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 MRPS26Q9BYN8 205 aaKnown RBP14.05□□□□□ -0.16
CLN3-202ENST00000355477 SCPEP1Q9HB40 452 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 HRASLSQ9HDD0 168 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 ZNF257Q9Y2Q1 563 aa14.05□□□□□ -0.16
CLN3-202ENST00000355477 NPIPB5A8MRT5 1133 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 RLN1P04808 185 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 RPA2P15927 270 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 NQO2P16083 231 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 ZNF182P17025 639 aaPredicted RBP14.04□□□□□ -0.16
CLN3-202ENST00000355477 EXOSC2Q13868 293 aaKnown RBP14.04□□□□□ -0.16
CLN3-202ENST00000355477 VAX1Q5SQQ9 334 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 SLC25A42Q86VD7 318 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 NECAP1Q8NC96 275 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 OR6Q1Q8NGQ2 317 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 OR4A5Q8NH83 315 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 CD300LFQ8TDQ1 290 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 FANCD2OSQ96PS1 177 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 AIFM2Q9BRQ8 373 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 PLEKHA2Q9HB19 425 aa14.04□□□□□ -0.16
CLN3-202ENST00000355477 FAM25AB3EWG3 89 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 FAM25CB3EWG5 89 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 FAM25GB3EWG6 89 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 BMPR1BO00238 502 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 UPK2O00526 184 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 IGLV1-51P01701 117 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 CRYGCP07315 174 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 GP9P14770 177 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 OR2B8PP59922 312 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 C15orf32Q32M92 178 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 MZT2AQ6P582 158 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 OR9G4Q8NGQ1 327 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 BORCS5Q969J3 196 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 RSRP1Q9BUV0 290 aa14.03□□□□□ -0.16
CLN3-202ENST00000355477 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.02□□□□□ -0.17
CLN3-202ENST00000355477 DPPA5A6NC42 116 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 158.9 ms