RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 IFNA5P01569 189 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 ZFP36P26651 326 aaKnown RBP10.85□□□□□ -0.67
HMGB1-202ENST00000339872 RAB13P51153 203 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 RUNX1Q01196 453 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 PDLIM3Q53GG5 364 aaPredicted RBP10.85□□□□□ -0.67
HMGB1-202ENST00000339872 TOR2AQ5JU69 321 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 TMEM182Q6ZP80 229 aaPredicted RBP10.85□□□□□ -0.67
HMGB1-202ENST00000339872 OR4C13Q8NGP0 309 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 SAT2Q96F10 170 aaPredicted RBP10.85□□□□□ -0.67
HMGB1-202ENST00000339872 HEYLQ9NQ87 328 aaPredicted RBP10.85□□□□□ -0.67
HMGB1-202ENST00000339872 CACFD1Q9UGQ2 172 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 AMMECR1Q9Y4X0 333 aaPredicted RBP10.85□□□□□ -0.67
HMGB1-202ENST00000339872 IGHV3-72A0A0B4J1Y9 119 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 A1L4Q6 167 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 UPK2O00526 184 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 MYOD1P15172 320 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 PDLIM4P50479 330 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 PXDC1Q5TGL8 231 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 OR2G3Q8NGZ4 309 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 CLDND2Q8NHS1 167 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 HIPK2Q9H2X6 1198 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 BET1LQ9NYM9 111 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 PRNDQ9UKY0 176 aa10.85□□□□□ -0.67
HMGB1-202ENST00000339872 ARG1P05089 322 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 IL6RP08887 468 aaPredicted RBP10.84□□□□□ -0.67
HMGB1-202ENST00000339872 MC5RP33032 325 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 LCN2P80188 198 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 KLRD1Q13241 179 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 Q6ZRG5 221 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 GNPNAT1Q96EK6 184 aaPredicted RBP10.84□□□□□ -0.67
HMGB1-202ENST00000339872 OR51B2Q9Y5P1 312 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 C15orf62A8K5M9 175 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 ENSAO43768 121 aaKnown RBP10.84□□□□□ -0.67
HMGB1-202ENST00000339872 LY86O95711 162 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 IFNA10P01566 189 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 PRH1P02810 166 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 FGF2P09038 288 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 VDAC2P45880 294 aaPredicted RBP10.84□□□□□ -0.67
HMGB1-202ENST00000339872 HSPE1P61604 102 aaKnown RBP10.84□□□□□ -0.67
HMGB1-202ENST00000339872 HSD17B13Q7Z5P4 300 aaPredicted RBP10.84□□□□□ -0.67
HMGB1-202ENST00000339872 PUSL1Q8N0Z8 303 aaKnown RBP10.84□□□□□ -0.67
HMGB1-202ENST00000339872 RPEQ96AT9 228 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 HINT2Q9BX68 163 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 MS4A7Q9GZW8 240 aaPredicted RBP10.84□□□□□ -0.67
HMGB1-202ENST00000339872 HRH4Q9H3N8 390 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 INSIG2Q9Y5U4 225 aa10.84□□□□□ -0.67
HMGB1-202ENST00000339872 IGHV1-3A0A0C4DH29 117 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 UBE2L5PA0A1B0GUS4 154 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 PMS2P5A8MQ11 134 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 KBTBD11O94819 623 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 COX6B1P14854 86 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 BLOC1S1P78537 153 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 MOB3BQ86TA1 216 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 THNSL2Q86YJ6 484 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 OR10P1Q8NGE3 313 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 SCGB1C1Q8TD33 95 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 OPN1MWP04001 364 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 OPN1MW2P0DN77 364 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 OPN1MW3P0DN78 364 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 PRTN3P24158 256 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 CAMLGP49069 296 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 FHITP49789 147 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 LMO4P61968 165 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 RPP30P78346 268 aaKnown RBP10.83□□□□□ -0.68
HMGB1-202ENST00000339872 ZNF616Q08AN1 781 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 KIR3DL3Q8N743 410 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 OR11H6Q8NGC7 330 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 PINX1Q96BK5 328 aaKnown RBP10.83□□□□□ -0.68
HMGB1-202ENST00000339872 ENY2Q9NPA8 101 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 PARP11Q9NR21 331 aa10.83□□□□□ -0.68
HMGB1-202ENST00000339872 UBR5O95071 2799 aaPredicted RBP10.82□□□□□ -0.68
HMGB1-202ENST00000339872 OR8U8P0C7N1 319 aa10.82□□□□□ -0.68
HMGB1-202ENST00000339872 RAB5CP51148 216 aa10.82□□□□□ -0.68
HMGB1-202ENST00000339872 VMO1Q7Z5L0 202 aa10.82□□□□□ -0.68
HMGB1-202ENST00000339872 FAM168AQ92567 244 aa10.82□□□□□ -0.68
HMGB1-202ENST00000339872 MARC2Q969Z3 335 aa10.82□□□□□ -0.68
HMGB1-202ENST00000339872 RSG1Q9BU20 258 aa10.82□□□□□ -0.68
HMGB1-202ENST00000339872 ZNF257Q9Y2Q1 563 aa10.82□□□□□ -0.68
HMGB1-202ENST00000339872 A8MXK9 166 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 IGLV2-23P01705 113 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 HTR1DP28221 377 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 ATP5J2P56134 94 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 LRRC75BQ2VPJ9 315 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 EIF4E3Q8N5X7 224 aaKnown RBP10.81□□□□□ -0.68
HMGB1-202ENST00000339872 VSTM2AQ8TAG5 236 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 FAM213BQ8TBF2 198 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 MARVELD3Q96A59 401 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 RITA1Q96K30 269 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 PIMREGQ9BSJ6 248 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 TMEM147Q9BVK8 224 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 PLEKHA3Q9HB20 300 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 MMP26Q9NRE1 261 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 FKBP11Q9NYL4 201 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 IGHV2-70DA0A0C4DH43 119 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 TEX50A0A1B0GTY4 177 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 A0A1W2PRD5 423 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 A0A1W2PRF3 423 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 A0A1W2PRM7 423 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 LY6LH3BQJ8 138 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 RRHO14718 337 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms