RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 P0C879 139 aa17.65■□□□□ 0.42
TRIM28-201ENST00000253024 PRB3Q04118 309 aaPredicted RBP17.65■□□□□ 0.42
TRIM28-201ENST00000253024 LURAP1LQ8IV03 231 aa17.65■□□□□ 0.42
TRIM28-201ENST00000253024 C15orf65H3BRN8 121 aa17.64■□□□□ 0.42
TRIM28-201ENST00000253024 FOXH1O75593 365 aa17.64■□□□□ 0.42
TRIM28-201ENST00000253024 PFN1P07737 140 aaKnown RBP17.64■□□□□ 0.42
TRIM28-201ENST00000253024 DEFA6Q01524 100 aa17.64■□□□□ 0.42
TRIM28-201ENST00000253024 EIF4EBP1Q13541 118 aaPredicted RBP17.64■□□□□ 0.42
TRIM28-201ENST00000253024 MORN2Q502X0 79 aa17.64■□□□□ 0.42
TRIM28-201ENST00000253024 NEIL1Q96FI4 390 aaPredicted RBP17.64■□□□□ 0.42
TRIM28-201ENST00000253024 PROCRQ9UNN8 238 aa17.64■□□□□ 0.42
TRIM28-201ENST00000253024 ASH1LQ9NR48 2969 aaKnown RBP17.64■□□□□ 0.41
TRIM28-201ENST00000253024 RAB29O14966 203 aa17.64■□□□□ 0.41
TRIM28-201ENST00000253024 RND2P52198 227 aa17.64■□□□□ 0.41
TRIM28-201ENST00000253024 MLANAQ16655 118 aa17.64■□□□□ 0.41
TRIM28-201ENST00000253024 STARD4Q96DR4 205 aa17.64■□□□□ 0.41
TRIM28-201ENST00000253024 P2RX4Q99571 388 aa17.64■□□□□ 0.41
TRIM28-201ENST00000253024 ZNF320A2RRD8 509 aa17.64■□□□□ 0.41
TRIM28-201ENST00000253024 TMEM140Q9NV12 185 aa17.64■□□□□ 0.41
TRIM28-201ENST00000253024 SCO2A0A1W2PP80 73 aa17.63■□□□□ 0.41
TRIM28-201ENST00000253024 FAM90A26D6RGX4 464 aa17.63■□□□□ 0.41
TRIM28-201ENST00000253024 MMP23AO75900 390 aa17.63■□□□□ 0.41
TRIM28-201ENST00000253024 BHLHA15Q7RTS1 189 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-201ENST00000253024 PRR31Q5SQ13 230 aa17.63■□□□□ 0.41
TRIM28-201ENST00000253024 S1PR3Q99500 378 aa17.63■□□□□ 0.41
TRIM28-201ENST00000253024 SEPSECSQ9HD40 501 aaKnown RBP17.63■□□□□ 0.41
TRIM28-201ENST00000253024 DKK4Q9UBT3 224 aa17.63■□□□□ 0.41
TRIM28-201ENST00000253024 TNFSF13O75888 250 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 FTH1P19P0C7X4 201 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 REG1BP48304 166 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 ACSF3Q4G176 576 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-201ENST00000253024 TREML4Q6UXN2 200 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 CCL13Q99616 98 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 DMRT1Q9Y5R6 373 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 GRIFINA4D1Z8 144 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 AMBPP02760 352 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 PMS2P11Q13670 270 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 ZNF600Q6ZNG1 722 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 FAM216BQ8N7L0 139 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 TMEM170AQ8WVE7 144 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 IMMP2LQ96T52 175 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 BSNQ9UPA5 3926 aa17.62■□□□□ 0.41
TRIM28-201ENST00000253024 K7EM74 188 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 SLC17A3O00476 420 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 ERVK-16P61578 105 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 ACOT6Q3I5F7 207 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-201ENST00000253024 SEM1Q6ZVN7 128 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 HSD17B10Q99714 261 aaKnown RBP17.61■□□□□ 0.41
TRIM28-201ENST00000253024 MGST2Q99735 147 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 PXMP4Q9Y6I8 212 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 TANC2Q9HCD6 1990 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 ZNF318Q5VUA4 2279 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 RBFOX2O43251 390 aaKnown RBP eCLIP17.61■□□□□ 0.41
TRIM28-201ENST00000253024 FRMD6-AS1P0C7T7 363 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 SLC35B1P78383 322 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 Q8N7P7 452 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 TRBV20OR9-2A0A075B6H5 130 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 FAM27E3Q08E93 113 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 OR2T10Q8NGZ9 312 aa17.61■□□□□ 0.41
TRIM28-201ENST00000253024 ZNF71Q9NQZ8 489 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-201ENST00000253024 TLN1Q9Y490 2541 aaKnown RBP17.6■□□□□ 0.41
TRIM28-201ENST00000253024 TRBV24-1A0A075B6N3 115 aa17.6■□□□□ 0.41
TRIM28-201ENST00000253024 C17orf112F2Z3M2 114 aa17.6■□□□□ 0.41
TRIM28-201ENST00000253024 GPX4P36969 197 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-201ENST00000253024 CCL8P80075 99 aa17.6■□□□□ 0.41
TRIM28-201ENST00000253024 LHFPL4Q7Z7J7 247 aa17.6■□□□□ 0.41
TRIM28-201ENST00000253024 FAM216AQ8WUB2 273 aa17.6■□□□□ 0.41
TRIM28-201ENST00000253024 SARAFQ96BY9 339 aa17.6■□□□□ 0.41
TRIM28-201ENST00000253024 HIPK2Q9H2X6 1198 aa17.6■□□□□ 0.41
TRIM28-201ENST00000253024 CIB3Q96Q77 187 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-201ENST00000253024 AHRRA9YTQ3 701 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 ZBTB34Q8NCN2 500 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 PRR33A8MZF0 331 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 HRASP01112 189 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 PRB4P10163 310 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-201ENST00000253024 OR1P1Q8NH06 330 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 LRFN3Q9BTN0 628 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 IFI27L2Q9H2X8 130 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 CALYQ9NYX4 217 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 TCF19Q9Y242 345 aa17.59■□□□□ 0.41
TRIM28-201ENST00000253024 SAA2-SAA4A0A096LPE2 208 aa17.58■□□□□ 0.41
TRIM28-201ENST00000253024 SAA2P0DJI9 122 aaPredicted RBP17.58■□□□□ 0.41
TRIM28-201ENST00000253024 HIST1H1BP16401 226 aaKnown RBP17.58■□□□□ 0.41
TRIM28-201ENST00000253024 ZNF474Q6S9Z5 364 aaPredicted RBP17.58■□□□□ 0.41
TRIM28-201ENST00000253024 MRPL41Q8IXM3 137 aaKnown RBP17.58■□□□□ 0.41
TRIM28-201ENST00000253024 SRD5A3Q9H8P0 318 aa17.58■□□□□ 0.41
TRIM28-201ENST00000253024 PARD6AQ9NPB6 346 aa17.58■□□□□ 0.41
TRIM28-201ENST00000253024 ZZEF1O43149 2961 aa17.58■□□□□ 0.41
TRIM28-201ENST00000253024 TRAV17A0A0B4J275 112 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 PIGBOS1A0A0B4J2F0 54 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 A0A1B0GV90 55 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 DVL1O14640 695 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 OR5I1Q13606 314 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 ATP6V1FQ16864 119 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 CT45A1Q5HYN5 189 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 LINC01551Q86U37 167 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 TMEM256Q8N2U0 113 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 CT45A3Q8NHU0 189 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 SGMS2Q8NHU3 365 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 RNF224P0DH78 156 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms