RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ZNF418Q8TF45 676 aaPredicted RBP7.69□□□□□ -1.18
CUX1-216ENST00000558469 CHPT1Q8WUD6 406 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 HARBI1Q96MB7 349 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 DUX5Q96PT3 197 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 FAM212BQ9NTI7 297 aaPredicted RBP7.69□□□□□ -1.18
CUX1-216ENST00000558469 NIPBLQ6KC79 2804 aaeCLIP7.68□□□□□ -1.18
CUX1-216ENST00000558469 A6NDX4 124 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 NCBP2LA6PVI3 153 aaKnown RBP7.68□□□□□ -1.18
CUX1-216ENST00000558469 SRRM4A7MD48 611 aaKnown RBP7.68□□□□□ -1.18
CUX1-216ENST00000558469 PLXNB1O43157 2135 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 PRAF2O60831 178 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 CDS2O95674 445 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 HRASP01112 189 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 KRASP01116 189 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 IGKV1-39P01597 117 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 IGKV1D-39P04432 117 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 IL5P05113 134 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 RPA2P15927 270 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 UCP1P25874 307 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 G6PCP35575 357 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 MMDQ15546 238 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 ANKRD55Q3KP44 614 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 LIN54Q6MZP7 749 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 SSX9Q7RTT3 188 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 ZNF695Q8IW36 515 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 VKORC1L1Q8N0U8 176 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 Q8N6K4 173 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 OSR1Q8TAX0 266 aaPredicted RBP7.68□□□□□ -1.18
CUX1-216ENST00000558469 R3HDM4Q96D70 268 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 TSNAXQ99598 290 aaKnown RBP7.68□□□□□ -1.18
CUX1-216ENST00000558469 RNF5Q99942 180 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 SLC25A33Q9BSK2 321 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 PLEKHA2Q9HB19 425 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 GPN1Q9HCN4 374 aaPredicted RBP7.68□□□□□ -1.18
CUX1-216ENST00000558469 PITPNC1Q9UKF7 332 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 TCF19Q9Y242 345 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 POMT1Q9Y6A1 747 aa7.68□□□□□ -1.18
CUX1-216ENST00000558469 A0A0A6YYJ9 748 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 DNAJC9-AS1A6NH13 148 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 MARCH11A6NNE9 402 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 NBR2O15453 112 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 OR2F2O95006 317 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 DUS4LO95620 317 aaKnown RBP7.67□□□□□ -1.18
CUX1-216ENST00000558469 IGLV2-23P01705 113 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 NQO2P16083 231 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 LGALS7P47929 136 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 SRPXP78539 464 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 TATDN3Q17R31 274 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 TMEM268Q5VZI3 342 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 SELENOHQ8IZQ5 122 aaKnown RBP7.67□□□□□ -1.18
CUX1-216ENST00000558469 LGI3Q8N145 548 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 UXS1Q8NBZ7 420 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 DMBX1Q8NFW5 382 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 COQ8AQ8NI60 647 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 LHFPL5Q8TAF8 219 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 ZNF431Q8TF32 576 aaPredicted RBP7.67□□□□□ -1.18
CUX1-216ENST00000558469 RBPMSQ93062 196 aaKnown RBP7.67□□□□□ -1.18
CUX1-216ENST00000558469 SEC22AQ96IW7 307 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 RHOVQ96L33 236 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 TMEM56Q96MV1 263 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 RBM14Q96PK6 669 aaKnown RBP7.67□□□□□ -1.18
CUX1-216ENST00000558469 PHB2Q99623 299 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 AIFM2Q9BRQ8 373 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 CHIAQ9BZP6 476 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 ESM1Q9NQ30 184 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 PLSCR3Q9NRY6 295 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 COMMD9Q9P000 198 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 KIAA1456Q9P272 454 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 VPREB3Q9UKI3 123 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 TMEM56-RWDD3S4R434 201 aa7.67□□□□□ -1.18
CUX1-216ENST00000558469 TNCP24821 2201 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 A0A0B4J293 547 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 RRHO14718 337 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 SLC25A17O43808 307 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 CHST1O43916 411 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 CREBL2O60519 120 aaPredicted RBP7.66□□□□□ -1.18
CUX1-216ENST00000558469 ATG12O94817 140 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 SAA1P0DJI8 122 aaPredicted RBP7.66□□□□□ -1.18
CUX1-216ENST00000558469 AKR1C2P52895 323 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 HILS1P60008 231 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 ERVK-16P61578 105 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 PLGLAQ15195 96 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 PSG5Q15238 335 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 VMA21Q3ZAQ7 101 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 OR4A47Q6IF82 309 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 H2BFWTQ7Z2G1 175 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 LYZL2Q7Z4W2 148 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 C12orf45Q8N5I9 185 aaPredicted RBP7.66□□□□□ -1.18
CUX1-216ENST00000558469 TMEM86BQ8N661 226 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 SLC35G3Q8N808 338 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 NPBQ8NG41 125 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 RNASE11Q8TAA1 199 aaKnown RBP7.66□□□□□ -1.18
CUX1-216ENST00000558469 MITD1Q8WV92 249 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 IL22RA2Q969J5 263 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 CLCC1Q96S66 551 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 FBXL15Q9H469 300 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 C1RLQ9NZP8 487 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 METTL1Q9UBP6 276 aaKnown RBP7.66□□□□□ -1.18
CUX1-216ENST00000558469 MOB4Q9Y3A3 225 aa7.66□□□□□ -1.18
CUX1-216ENST00000558469 ALG5Q9Y673 324 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms