RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 A0A0A6YYD4 124 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 SLC17A3O00476 420 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 SH2D1BO14796 132 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 SNAI2O43623 268 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 AMBPP02760 352 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 OR4A8P0C604 315 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ACP1P24666 158 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 F2RP25116 425 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 RAB7AP51149 207 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF137PP52743 207 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 SELENOVP59797 346 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 AARDQ4LEZ3 155 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 STUMQ69YW2 141 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF818PQ6ZRF7 136 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 RABEPKQ7Z6M1 372 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 FAM19A2Q8N3H0 131 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF664Q8N3J9 261 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 OR6X1Q8NH79 312 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF519Q8TB69 540 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 GTF3AQ92664 365 aaKnown RBP4.65□□□□□ -1.66
LIMA1-203ENST00000547825 PARD6GQ9BYG4 376 aaPredicted RBP4.65□□□□□ -1.66
LIMA1-203ENST00000547825 RIMS4Q9H426 269 aaPredicted RBP4.65□□□□□ -1.66
LIMA1-203ENST00000547825 MYOZ1Q9NP98 299 aaPredicted RBP4.65□□□□□ -1.66
LIMA1-203ENST00000547825 LYRM2Q9NU23 88 aaPredicted RBP4.65□□□□□ -1.66
LIMA1-203ENST00000547825 CLDN16Q9Y5I7 305 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 MED13Q9UHV7 2174 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 A0A1B0GUS0 222 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 CDIPTO14735 213 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 HOXA3O43365 443 aaPredicted RBP4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ISG15P05161 165 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 CELA2AP08217 269 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 UQCRFS1P47985 274 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 SUCLG1P53597 346 aaKnown RBP4.65□□□□□ -1.66
LIMA1-203ENST00000547825 GABRA6Q16445 453 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 SLC25A45Q8N413 288 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 AGBL5Q8NDL9 886 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 OR2D3Q8NGH3 330 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF721Q8TF20 911 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ABHD3Q8WU67 409 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 BLNKQ8WV28 456 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 DEFB127Q9H1M4 99 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 OR6C3Q9NZP0 311 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF581Q9P0T4 197 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 OR1A1Q9P1Q5 309 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 PPIAL4AQ9Y536 164 aa4.65□□□□□ -1.66
LIMA1-203ENST00000547825 A0A1W2PNU3 283 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-203ENST00000547825 C5orf63A6NC05 138 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 RRP8O43159 456 aaKnown RBP4.65□□□□□ -1.67
LIMA1-203ENST00000547825 MELTFP08582 738 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 ICAM4Q14773 271 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 PSG5Q15238 335 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 KCNMB1Q16558 191 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 LYSMD4Q5XG99 296 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 OR4A47Q6IF82 309 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 SMIM15Q7Z3B0 74 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 MUC15Q8N387 334 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 GATAD1Q8WUU5 269 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 HSD17B10Q99714 261 aaKnown RBP4.65□□□□□ -1.67
LIMA1-203ENST00000547825 IGKV1-9A0A0C4DH69 117 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 CD55P08174 381 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 CYB561P49447 251 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 MFAP2P55001 183 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 LSM6P62312 80 aaKnown RBP4.65□□□□□ -1.67
LIMA1-203ENST00000547825 RAB35Q15286 201 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 TAF15Q92804 592 aaKnown RBP eCLIP4.65□□□□□ -1.67
LIMA1-203ENST00000547825 TRIB1Q96RU8 372 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 RASL10BQ96S79 203 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 TMEM147Q9BVK8 224 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 PRDM13Q9H4Q3 707 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 VSIRQ9H7M9 311 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 SEMA5BQ9P283 1151 aa4.65□□□□□ -1.67
LIMA1-203ENST00000547825 CHD3Q12873 2000 aaKnown RBP4.64□□□□□ -1.67
LIMA1-203ENST00000547825 CTXND1A0A1B0GTU2 59 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 FAM90A20PA6NIJ5 464 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 NTN3O00634 580 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-203ENST00000547825 APELAP0DMC3 54 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 CD81P60033 236 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 MMDQ15546 238 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 C3AR1Q16581 482 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 LBHQ53QV2 105 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-203ENST00000547825 SELENOHQ8IZQ5 122 aaKnown RBP4.64□□□□□ -1.67
LIMA1-203ENST00000547825 TMEM256Q8N2U0 113 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 C11orf44Q8N8P7 122 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 ZNF738Q8NE65 137 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 SMDT1Q9H4I9 107 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 OR2W1Q9Y3N9 320 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 NBPF19A0A087WUL8 3843 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 IGHV1OR21-1A0A087WYE8 117 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 LMO7DNF2Z398 122 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 PGLYRP1O75594 196 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-203ENST00000547825 IGFBP3P17936 291 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-203ENST00000547825 GNG3P63215 75 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 GTF3C1Q12789 2109 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 JOSD1Q15040 202 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-203ENST00000547825 RPEL1Q2QD12 228 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 TMEM108Q6UXF1 575 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 ANKRD37Q7Z713 158 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 OR10D3Q8NH80 312 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 CLDND2Q8NHS1 167 aa4.64□□□□□ -1.67
LIMA1-203ENST00000547825 ABHD14BQ96IU4 210 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms