RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 RBFOX2O43251 390 aaKnown RBP eCLIP10.91□□□□□ -0.66
CD44-224ENST00000526669 HPRT1P00492 218 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 SERPINE2P07093 398 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 OR4E1P0C645 316 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 SAA1P0DJI8 122 aaPredicted RBP10.91□□□□□ -0.66
CD44-224ENST00000526669 G6PCP35575 357 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 DHODHQ02127 395 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 TMEM187Q14656 261 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 TMEM128Q5BJH2 165 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 LIAT1Q6ZQX7 453 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 Q6ZS46 218 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 C16orf82Q7Z2V1 217 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 TCTEX1D1Q8N7M0 179 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 C5orf56Q8N8D9 126 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 DUSP18Q8NEJ0 188 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 DMBX1Q8NFW5 382 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 LHFPL5Q8TAF8 219 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 OSR1Q8TAX0 266 aaPredicted RBP10.91□□□□□ -0.66
CD44-224ENST00000526669 CD300LFQ8TDQ1 290 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 SEC22CQ9BRL7 303 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 C1RLQ9NZP8 487 aa10.91□□□□□ -0.66
CD44-224ENST00000526669 NDUFA3O95167 84 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 SFT2D2O95562 160 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 AMY1AP04745 511 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 UCP1P25874 307 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 BLCAPP62952 87 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 C5orf64Q2M2E5 130 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 VMA21Q3ZAQ7 101 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 C4orf46Q504U0 113 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 LIN54Q6MZP7 749 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 PLET1Q6UQ28 207 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 FAM71E2Q8N5Q1 922 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 NPBQ8NG41 125 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 GLYATL2Q8WU03 294 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 GALNT14Q96FL9 552 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 RNF5Q99942 180 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 RASL11BQ9BPW5 248 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 TMEM222Q9H0R3 208 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 PLEKHA2Q9HB19 425 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 RAB18Q9NP72 206 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 COMMD9Q9P000 198 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 KCNIP3Q9Y2W7 256 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 ATRQ13535 2644 aa10.9□□□□□ -0.66
CD44-224ENST00000526669 C9orf170A2RU37 121 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 INMT-MINDY4F8WBC2 141 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 FGF16O43320 207 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 SPDEFO95238 335 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 PTTG1O95997 202 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 HRASP01112 189 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 KRASP01116 189 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 HLA-AP01891 365 aaKnown RBP10.89□□□□□ -0.67
CD44-224ENST00000526669 CRYBA1P05813 215 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 ANXA3P12429 323 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 NQO2P16083 231 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 LGALS7P47929 136 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 UBE2MP61081 183 aaKnown RBP10.89□□□□□ -0.67
CD44-224ENST00000526669 ERVK-16P61578 105 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 PJVKQ0ZLH3 352 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 DHRS2Q13268 280 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 IZUMO4Q1ZYL8 232 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 TMEM95Q3KNT9 176 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 ANKRD55Q3KP44 614 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 ARSJQ5FYB0 599 aaPredicted RBP10.89□□□□□ -0.67
CD44-224ENST00000526669 TMEM268Q5VZI3 342 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 LYG2Q86SG7 212 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 SELENOHQ8IZQ5 122 aaKnown RBP10.89□□□□□ -0.67
CD44-224ENST00000526669 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.89□□□□□ -0.67
CD44-224ENST00000526669 OR8H1Q8NGG4 311 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 RNASE11Q8TAA1 199 aaKnown RBP10.89□□□□□ -0.67
CD44-224ENST00000526669 RHOVQ96L33 236 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 HSPB9Q9BQS6 159 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 TMEM140Q9NV12 185 aa10.89□□□□□ -0.67
CD44-224ENST00000526669 TRAV3A0A0B4J244 114 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 MARCH11A6NNE9 402 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 FCN1O00602 326 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 CA2P00918 260 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 IGKV1-5P01602 117 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 CRYGBP07316 175 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 OR9G9P0C7N8 305 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 MYOD1P15172 320 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 AKR1C2P52895 323 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 UBE2KP61086 200 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 GNB1P62873 340 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 RELBQ01201 579 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 RGS21Q2M5E4 152 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 OR4A47Q6IF82 309 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 C11orf88Q6PI97 169 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 Q6ZSV7 163 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 ZNF695Q8IW36 515 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 PUSL1Q8N0Z8 303 aaKnown RBP10.88□□□□□ -0.67
CD44-224ENST00000526669 SEC22AQ96IW7 307 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 NPFFR1Q9GZQ6 430 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 ZNF702PQ9H963 129 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 FAM212BQ9NTI7 297 aaPredicted RBP10.88□□□□□ -0.67
CD44-224ENST00000526669 NSG2Q9Y328 171 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 SIGLEC9Q9Y336 463 aa10.88□□□□□ -0.67
CD44-224ENST00000526669 A0A0G2JRQ6 117 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 LINC01548A6NM66 108 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 M0QZK8 103 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 B3GALNT1O75752 331 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms