RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 KCNS2Q9ULS6 477 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 RAI1Q7Z5J4 1906 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 B4DEV8 164 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 ZNF732B4DXR9 585 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 RBFOX2O43251 390 aaKnown RBP eCLIP6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 SYT7O43581 403 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 TK1P04183 234 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 CXCL1P09341 107 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 TCL1AP56279 114 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 PITPNAQ00169 270 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 RSPO1Q2MKA7 263 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 C2orf68Q2NKX9 166 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 AADACL3Q5VUY0 350 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 KDM4DQ6B0I6 523 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 ATOH7Q8N100 152 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 RDH5Q92781 318 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 C1orf159Q96HA4 380 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 CABLES2Q9BTV7 478 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 PIPOXQ9P0Z9 390 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 ONECUT1Q9UBC0 465 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 WASHC3Q9Y3C0 194 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 AKAP9Q99996 3911 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 BCL2L11O43521 198 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 SPRY1O43609 319 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 ZNF20P17024 532 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 RBM11P57052 281 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 LINC01590Q5TEZ4 76 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 PRSS57Q6UWY2 283 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 C11orf44Q8N8P7 122 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 OR51A4Q8NGJ6 313 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 OR4P4Q8NGL7 312 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 LYPD6BQ8NI32 183 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 TMEM106BQ9NUM4 274 aa6.59□□□□□ -1.35
LIMCH1-219ENST00000514096 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 TRAV39A0A0B4J263 110 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 HAX1O00165 279 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 MLNRO43193 412 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 SRD5A1P18405 259 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 TNFRSF1AP19438 455 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 H2BFSP57053 126 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 C1orf194Q5T5A4 169 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 OR4D5Q8NGN0 318 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 OR1P1Q8NH06 330 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 OTOSQ8NHW6 89 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 C10orf105Q8TEF2 133 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 PLEKHJ1Q9NW61 149 aa6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 TIMM8BQ9Y5J9 83 aaPredicted RBP6.59□□□□□ -1.36
LIMCH1-219ENST00000514096 OR4C45A6NMZ5 311 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 TRDCB7Z8K6 153 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 C9JQL5 133 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 PIGPP57054 158 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 PRDX4Q13162 271 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 KIAA1644Q3SXP7 199 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 FAM27D1Q5T7N8 215 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 SAXO1Q8IYX7 474 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 FAM216BQ8N7L0 139 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 ZNRF1Q8ND25 227 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 PBOV1Q9GZY1 135 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 KLK11Q9UBX7 282 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 POLR3KQ9Y2Y1 108 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 COX11Q9Y6N1 276 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 HMSDA8MTL9 139 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 APOA2P02652 100 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 CAV2P51636 162 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 HIST1H3AP68431 136 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 FABP5Q01469 135 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 COX19Q49B96 90 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 DTX2Q86UW9 622 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 KRTAP1-3Q8IUG1 177 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 Q8WTZ3 238 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 APH1BQ8WW43 257 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 TSSC4Q9Y5U2 329 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 FBN1P35555 2871 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 COX7A1P24310 79 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 LGALS7P47929 136 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 HMGN3Q15651 99 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 WDR25Q64LD2 544 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 FAM166AQ6J272 317 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 PPP1R1CQ8WVI7 109 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 P2RX4Q99571 388 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 C19orf24Q9BVV8 132 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 LYRM2Q9NU23 88 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 OR52A1Q9UKL2 312 aa6.58□□□□□ -1.36
LIMCH1-219ENST00000514096 LRRC30A6NM36 301 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 H0Y8G0 127 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 H7BYZ3 331 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 CD34P28906 385 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 RANP62826 216 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 C11orf71Q6IPW1 123 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 IL34Q6ZMJ4 242 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 C3orf56Q8N813 242 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 SCCPDHQ8NBX0 429 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 OR8G5Q8NG78 346 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 NUDCD2Q8WVJ2 157 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 FCAMRQ8WWV6 532 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 ATP5SQ99766 215 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 CTDSP1Q9GZU7 261 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 GCM1Q9NP62 436 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 CACFD1Q9UGQ2 172 aa6.57□□□□□ -1.36
LIMCH1-219ENST00000514096 MDFIC2A0A1B0GVS7 189 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms