RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ZNF585BQ52M93 769 aa23.5■■□□□ 1.35
LIMCH1-211ENST00000509638 C9orf152Q5JTZ5 239 aa23.5■■□□□ 1.35
LIMCH1-211ENST00000509638 CENPSQ8N2Z9 138 aa23.5■■□□□ 1.35
LIMCH1-211ENST00000509638 PLEKHA2Q9HB19 425 aa23.5■■□□□ 1.35
LIMCH1-211ENST00000509638 FAM212BQ9NTI7 297 aaPredicted RBP23.5■■□□□ 1.35
LIMCH1-211ENST00000509638 TSPAN9O75954 239 aa23.49■■□□□ 1.35
LIMCH1-211ENST00000509638 SAA1P0DJI8 122 aaPredicted RBP23.49■■□□□ 1.35
LIMCH1-211ENST00000509638 VMA21Q3ZAQ7 101 aa23.49■■□□□ 1.35
LIMCH1-211ENST00000509638 C19orf24Q9BVV8 132 aa23.49■■□□□ 1.35
LIMCH1-211ENST00000509638 COMMD9Q9P000 198 aa23.49■■□□□ 1.35
LIMCH1-211ENST00000509638 FLVCR2Q9UPI3 526 aa23.49■■□□□ 1.35
LIMCH1-211ENST00000509638 HRASP01112 189 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 OR5AC1P0C628 307 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 LPAR6P43657 344 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 TAS2R31P59538 309 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 DEFA1P59665 94 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 DEFA3P59666 94 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 UBE2KP61086 200 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 SP6Q3SY56 376 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 SGPP2Q8IWX5 399 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 RHOVQ96L33 236 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 C20orf85Q9H1P6 137 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 FAM240BA0A1B0GVZ2 78 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 SERPINE2P07093 398 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 ARSJQ5FYB0 599 aaPredicted RBP23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 SSX9Q7RTT3 188 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 Q8N2B8 174 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 OR4F5Q8NH21 305 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 TMEM158Q8WZ71 300 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 SIGLEC9Q9Y336 463 aa23.48■■□□□ 1.35
LIMCH1-211ENST00000509638 TENM1Q9UKZ4 2725 aa23.47■■□□□ 1.35
LIMCH1-211ENST00000509638 ARPC1BO15143 372 aaKnown RBP23.47■■□□□ 1.35
LIMCH1-211ENST00000509638 HLA-DRB1P01911 266 aa23.47■■□□□ 1.35
LIMCH1-211ENST00000509638 NQO2P16083 231 aa23.47■■□□□ 1.35
LIMCH1-211ENST00000509638 TMEM95Q3KNT9 176 aa23.47■■□□□ 1.35
LIMCH1-211ENST00000509638 OR2T6Q8NHC8 308 aa23.47■■□□□ 1.35
LIMCH1-211ENST00000509638 HSPB9Q9BQS6 159 aa23.47■■□□□ 1.35
LIMCH1-211ENST00000509638 TNCP24821 2201 aa23.46■■□□□ 1.35
LIMCH1-211ENST00000509638 B3GALNT1O75752 331 aa23.46■■□□□ 1.35
LIMCH1-211ENST00000509638 LIN54Q6MZP7 749 aa23.46■■□□□ 1.35
LIMCH1-211ENST00000509638 ENKURQ8TC29 256 aa23.46■■□□□ 1.35
LIMCH1-211ENST00000509638 R3HDM4Q96D70 268 aa23.46■■□□□ 1.35
LIMCH1-211ENST00000509638 NUDT15Q9NV35 164 aa23.46■■□□□ 1.35
LIMCH1-211ENST00000509638 MARCH11A6NNE9 402 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 TCRBP04435 133 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 CRYGBP07316 175 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 UCP1P25874 307 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 SUPT4H1P63272 117 aaKnown RBP23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 TRIM16LQ309B1 348 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 TMEM128Q5BJH2 165 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 PPP1R27Q86WC6 154 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 CLCC1Q96S66 551 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 TMEM222Q9H0R3 208 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 C16orf95Q9H693 158 aa23.45■■□□□ 1.34
LIMCH1-211ENST00000509638 RPA2P15927 270 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 ERVK-16P61578 105 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 SLC25A42Q86VD7 318 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 TEX45Q8NA69 505 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 DMBX1Q8NFW5 382 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 AIFM2Q9BRQ8 373 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 CA2P00918 260 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 IGKV1-39P01597 117 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 IGKV1D-39P04432 117 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 MDKP21741 143 aaPredicted RBP23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 POU2AF1Q16633 256 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 OR4A47Q6IF82 309 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 LINC01006Q8NI28 216 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 VSTM2AQ8TAG5 236 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 GALNT14Q96FL9 552 aa23.44■■□□□ 1.34
LIMCH1-211ENST00000509638 FCN1O00602 326 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 KBTBD11O94819 623 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 KRASP01116 189 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 IGHG2P01859 326 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 ANXA7P20073 488 aaKnown RBP23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 VAMP1P23763 118 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 G6PCP35575 357 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 VDAC2P45880 294 aaPredicted RBP23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 PJVKQ0ZLH3 352 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 PPP1R1AQ13522 171 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 NRARPQ7Z6K4 114 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 SLC35E3Q7Z769 313 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 PUSL1Q8N0Z8 303 aaKnown RBP23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 GLYATL2Q8WU03 294 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 PALMDQ9NP74 551 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 TMEM140Q9NV12 185 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 KCNIP3Q9Y2W7 256 aa23.43■■□□□ 1.34
LIMCH1-211ENST00000509638 TRAV6A0A075B6T7 132 aa23.42■■□□□ 1.34
LIMCH1-211ENST00000509638 IGHV7-81A0A0B4J1V7 117 aa23.42■■□□□ 1.34
LIMCH1-211ENST00000509638 OR2A4O95047 310 aa23.42■■□□□ 1.34
LIMCH1-211ENST00000509638 OR2A7Q96R45 310 aa23.42■■□□□ 1.34
LIMCH1-211ENST00000509638 BEX1Q9HBH7 125 aa23.42■■□□□ 1.34
LIMCH1-211ENST00000509638 PRR13Q9NZ81 148 aa23.42■■□□□ 1.34
LIMCH1-211ENST00000509638 TMEM89A2RUT3 159 aa23.41■■□□□ 1.34
LIMCH1-211ENST00000509638 NDPQ00604 133 aa23.41■■□□□ 1.34
LIMCH1-211ENST00000509638 FOXL1Q12952 345 aa23.41■■□□□ 1.34
LIMCH1-211ENST00000509638 ZNF430Q9H8G1 570 aaPredicted RBP23.41■■□□□ 1.34
LIMCH1-211ENST00000509638 SERTAD4Q9NUC0 356 aa23.41■■□□□ 1.34
LIMCH1-211ENST00000509638 KCNAB3O43448 404 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 ANXA3P12429 323 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 UBE2MP61081 183 aaKnown RBP23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms