RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ZNF728P0DKX0 622 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 BCL3P20749 454 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 GLRXP35754 106 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 OR8B8Q15620 311 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 MKXQ8IYA7 352 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 POC1AQ8NBT0 407 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 TMEM171Q8WVE6 324 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 LHX4Q969G2 390 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 ALKBH7Q9BT30 221 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 ZNF442Q9H7R0 627 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 GPR132Q9UNW8 380 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 RAC2P15153 192 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 MPZP25189 248 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 THBS3P49746 956 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 EDDM3AQ14507 147 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 LTC4SQ16873 150 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 CXorf66Q5JRM2 361 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 COL5A1-AS1Q5SY13 56 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 THRSPQ92748 146 aa7.29□□□□□ -1.24
LIMCH1-209ENST00000509277 KIAA1324LA8MWY0 1029 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 HSD17B6O14756 317 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 SRP19P09132 144 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 MGST1P10620 155 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 GNG3P63215 75 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 EWSR1Q01844 656 aaKnown RBP eCLIP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 HOGA1Q86XE5 327 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 PPP1R14DQ9NXH3 145 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 POLR3KQ9Y2Y1 108 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 ANKRD17O75179 2603 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 IGKV1D-8A0A087WSZ0 117 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 J3QKU1 62 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 MLNRO43193 412 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 DEDDO75618 318 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 IGLV1-44P01699 117 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 TNFSF4P23510 183 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 P2RY1P47900 373 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 FUT6P51993 359 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 ADIPOQQ15848 244 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 PNLIPRP3Q17RR3 467 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 Q6ZR03 302 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 OR2C3Q8N628 320 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 LFNGQ8NES3 379 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 OR8G5Q8NG78 346 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 OR5D13Q8NGL4 314 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 CMTM2Q8TAZ6 248 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 SSC4DQ8WTU2 575 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 LRRC29Q8WV35 223 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 IL1F10Q8WWZ1 152 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 TECTBQ96PL2 329 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 SLC39A9Q9NUM3 307 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 ST3GAL6Q9Y274 331 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 ARHGAP32A7KAX9 2087 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 YLPM1P49750 1951 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 NDUFS7O75251 213 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 METTL15P1P0C7V9 234 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 HIST1H1DP16402 221 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 SUMO1P63165 101 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 ZNF266Q14584 549 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 COLCA1Q6ZS62 124 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 TPRX1Q8N7U7 411 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 NKAIN3Q8N8D7 197 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 RTBDNQ9BSG5 229 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 OR51I2Q9H344 312 aa7.28□□□□□ -1.24
LIMCH1-209ENST00000509277 COX6B1P14854 86 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 MRPS11P82912 194 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 LHFPL2Q6ZUX7 228 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 SCCPDHQ8NBX0 429 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 NAA38Q9BRA0 125 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 SAP30LQ9HAJ7 183 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 JKAMPQ9P055 326 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 PPP1R3CQ9UQK1 317 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 HRNRQ86YZ3 2850 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 FPR2P25090 351 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 TCL1AP56279 114 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 BSXQ3C1V8 233 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 CEACAM21Q3KPI0 293 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 SPANXN5Q5MJ07 72 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 ZNF439Q8NDP4 499 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 ZNF286AQ9HBT8 521 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 POMT1Q9Y6A1 747 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 MALRD1Q5VYJ5 2156 aa7.27□□□□□ -1.25
LIMCH1-209ENST00000509277 WIPF3A6NGB9 483 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 TK1P04183 234 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 SEC11BP0C7V7 166 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 AMTP48728 403 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 TMEM183BQ1AE95 376 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 ZNF573Q86YE8 665 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 RCC1LQ96I51 464 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 FGF23Q9GZV9 251 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 LIME1Q9H400 295 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 RBKSQ9H477 322 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 PLEKHA2Q9HB19 425 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 STRAPQ9Y3F4 350 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 SONP18583 2426 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 IGKV1-12A0A0C4DH73 117 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 FAM157AC9JC47 383 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 ADAM20O43506 726 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 NUPR1O60356 82 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 IGKV1D-12P01611 117 aa7.26□□□□□ -1.25
LIMCH1-209ENST00000509277 IGHV3-13P01766 116 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms