RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 IQCJQ1A5X6 159 aa17.19■□□□□ 0.34
CLK3-202ENST00000395066 KCNIP4Q6PIL6 250 aa17.19■□□□□ 0.34
CLK3-202ENST00000395066 VKORC1L1Q8N0U8 176 aa17.19■□□□□ 0.34
CLK3-202ENST00000395066 QTRT1Q9BXR0 403 aaKnown RBP17.19■□□□□ 0.34
CLK3-202ENST00000395066 CADP27708 2225 aa17.19■□□□□ 0.34
CLK3-202ENST00000395066 FIP1L1Q6UN15 594 aaKnown RBP17.18■□□□□ 0.34
CLK3-202ENST00000395066 PCNX2A6NKB5 2137 aa17.18■□□□□ 0.34
CLK3-202ENST00000395066 TRAV38-1A0A0B4J264 116 aa17.18■□□□□ 0.34
CLK3-202ENST00000395066 TIMM8AO60220 97 aaPredicted RBP17.18■□□□□ 0.34
CLK3-202ENST00000395066 CNN1P51911 297 aaKnown RBP17.18■□□□□ 0.34
CLK3-202ENST00000395066 UBE2G2P60604 165 aa17.18■□□□□ 0.34
CLK3-202ENST00000395066 MRPL37Q9BZE1 423 aaKnown RBP17.18■□□□□ 0.34
CLK3-202ENST00000395066 ZDHHC11Q9H8X9 412 aa17.18■□□□□ 0.34
CLK3-202ENST00000395066 NPPCP23582 126 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 CHRNA7P36544 502 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 SLC35E4Q6ICL7 350 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 GBGT1Q8N5D6 347 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 ICE1Q9Y2F5 2266 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 MARCH11A6NNE9 402 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 OR9G9P0C7N8 305 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 HCFC1P51610 2035 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 CLDN14O95500 239 aa17.17■□□□□ 0.34
CLK3-202ENST00000395066 INTS1Q8N201 2190 aaKnown RBP17.16■□□□□ 0.34
CLK3-202ENST00000395066 TMEM210A6NLX4 147 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 C11orf94C9JXX5 98 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 LCN2P80188 198 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 FAM78BQ5VT40 261 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 WFIKKN1Q96NZ8 548 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 PROP1O75360 226 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 IL3RAP26951 378 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 EDDM3BP56851 147 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 FOXF2Q12947 444 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 UTF1Q5T230 341 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 FAM214BQ7L5A3 538 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 CD177Q8N6Q3 437 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 ZNF709Q8N972 641 aa17.16■□□□□ 0.34
CLK3-202ENST00000395066 PTPRBP23467 1997 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 PGPEP1LA6NFU8 196 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 C15orf62A8K5M9 175 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 TEX38Q6PEX7 206 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 DEFB123Q8N688 67 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 ZBTB34Q8NCN2 500 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 TMEM204Q9BSN7 226 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 DERL1Q9BUN8 251 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 CLCF1Q9UBD9 225 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 J3QW42 95 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 FCGR3BO75015 233 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 CECR9P0C854 216 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 Q6ZT83 130 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 WDR31Q8NA23 367 aa17.15■□□□□ 0.34
CLK3-202ENST00000395066 PATZ1Q9HBE1 687 aaKnown RBP17.15■□□□□ 0.34
CLK3-202ENST00000395066 IFNL4K9M1U5 179 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 RAB29O14966 203 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 SCGB1D1O95968 90 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 SP9P0CG40 484 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 CCL11P51671 97 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 Q8N7P7 452 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 ATG101Q9BSB4 218 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 SNHG12Q9BXW3 62 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 CXXC4Q9H2H0 198 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 FKBP11Q9NYL4 201 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 SOX15O60248 233 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 ATP5G3P48201 142 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 TNFSF10P50591 281 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 RPL15P61313 204 aaKnown RBP17.14■□□□□ 0.33
CLK3-202ENST00000395066 INO80CQ6PI98 192 aaPredicted RBP17.14■□□□□ 0.33
CLK3-202ENST00000395066 LINC01551Q86U37 167 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 C9orf106Q8NAJ2 232 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 TMEM178AQ8NBL3 297 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 R3HDM4Q96D70 268 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 SDSLQ96GA7 329 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 TRAPPC1Q9Y5R8 145 aa17.14■□□□□ 0.33
CLK3-202ENST00000395066 A0A0U1RQK1 487 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 ZNF320A2RRD8 509 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 NKX2-8O15522 239 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 CDC34P49427 236 aaPredicted RBP17.13■□□□□ 0.33
CLK3-202ENST00000395066 Q8TCH9 128 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 LRRC29Q8WV35 223 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 IGHV3OR15-7A0A075B7D8 119 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.13■□□□□ 0.33
CLK3-202ENST00000395066 HOXC12P31275 282 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 RPL39P5Q59GN2 51 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 SPRNQ5BIV9 151 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 CST9LP1Q5W188 147 aa17.13■□□□□ 0.33
CLK3-202ENST00000395066 TET2Q6N021 2002 aaPredicted RBP17.12■□□□□ 0.33
CLK3-202ENST00000395066 TRAV3A0A0B4J244 114 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 IGKV3-15P01624 115 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 CD99P14209 185 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 KIR2DL2P43627 348 aaPredicted RBP17.12■□□□□ 0.33
CLK3-202ENST00000395066 ERVFC1-1P60608 527 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 CBLN4Q9NTU7 201 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 C17orf112F2Z3M2 114 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 VWC2Q2TAL6 325 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 TMEM144Q7Z5S9 345 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 LEAP2Q969E1 77 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 TAAR6Q96RI8 345 aa17.12■□□□□ 0.33
CLK3-202ENST00000395066 C15orf65H3BRN8 121 aa17.11■□□□□ 0.33
CLK3-202ENST00000395066 GNB1P62873 340 aa17.11■□□□□ 0.33
CLK3-202ENST00000395066 PDE6DO43924 150 aa17.11■□□□□ 0.33
CLK3-202ENST00000395066 C1orf194Q5T5A4 169 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 214 ms