RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TOR2AQ5JU69 321 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 IGF2-ASQ6U949 168 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 TEPPQ6URK8 271 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 MYPOPQ86VE0 399 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 TTC9CQ8N5M4 171 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 MRGPRFQ96AM1 343 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 NOL4LQ96MY1 436 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 SMAD5-AS1Q9Y6J3 95 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 CACNA1IQ9P0X4 2223 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 SCTP09683 121 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 RNASE4P34096 147 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 DEFA6Q01524 100 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 TCTEX1D1Q8N7M0 179 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 MSGN1A6NI15 193 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 OGG1O15527 345 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 PPP1R17O96001 155 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 PDGFAP04085 211 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 RNASE1P07998 156 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 SMIM10L1P0DMW3 83 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 WT1P19544 449 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 SSX1Q16384 188 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 ATP6V1FQ16864 119 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 ARRDC1Q8N5I2 433 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 OR52I2Q8NH67 350 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 GLMPQ8WWB7 406 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 SMIM10Q96HG1 83 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 SMIM7Q9BQ49 75 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 AMY1AP04745 511 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 SNRPCP09234 159 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 PMCHP20382 165 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 PRSS53Q2L4Q9 553 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 GTF2H5Q6ZYL4 71 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 RXFP4Q8TDU9 374 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 SOX21Q9Y651 276 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 DIDO1Q9BTC0 2240 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 ZFHX2Q9C0A1 2572 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 IGSF23A1L1A6 192 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 LY6G6DO95868 133 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 CLPSP04118 112 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 ASAH2BP0C7U1 165 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 PRSS8Q16651 343 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 ZNF485Q8NCK3 441 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 PARP12Q9H0J9 701 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 PARP14Q460N5 1801 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 OOSP1A8MZH6 123 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 CTDSP2O14595 271 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 RANP62826 216 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 SUMO1P63165 101 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 ACTL10Q5JWF8 245 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 ABLIM2Q6H8Q1 611 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 LYSMD2Q8IV50 215 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 MARC2Q969Z3 335 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 CHCHD5Q9BSY4 110 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 NAA60Q9H7X0 242 aa7.72□□□□□ -1.17
LIMCH1-202ENST00000381753 CD3DP04234 171 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 RPL12P30050 165 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 SYNJ2BPP57105 145 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 LAX1Q8IWV1 398 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 NABP1Q96AH0 204 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 MPTX1A8MV57 137 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 TGOLN2O43493 480 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 ZNF324O75467 553 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 P01737 135 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 PSG2P11465 335 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 SPCS3P61009 180 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 RIMKLAQ8IXN7 391 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 MRPL20Q9BYC9 149 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 ZNF430Q9H8G1 570 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 LYRM2Q9NU23 88 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 TMEM140Q9NV12 185 aa7.71□□□□□ -1.17
LIMCH1-202ENST00000381753 FAM24AA6NFZ4 105 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 K7EM74 188 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 CA1P00915 261 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 CA2P00918 260 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 SNRPNP63162 240 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 C11orf91Q3C1V1 193 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 OR11H1Q8NG94 326 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 PRSS3P2Q8NHM4 247 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 MRPL30Q8TCC3 161 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 SLX1AQ9BQ83 275 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 TRAF4Q9BUZ4 470 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 IGHV4-30-2A0A087WSY4 118 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 ICMTO60725 284 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 OR2C1O95371 312 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 PPYP01298 95 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 OR9G9P0C7N8 305 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 EVX1P49640 407 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 PSMB2P49721 201 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 MGAT2Q10469 447 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 TWIST1Q15672 202 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 MST1LQ2TV78 715 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 ABHD1Q96SE0 405 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 C20orf27Q9GZN8 174 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 MRM2Q9UI43 246 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 RPUSD1Q9UJJ7 312 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 GCAP28676 217 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 SELENOTP62341 195 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 RNF151Q2KHN1 245 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 TMEM256Q8N2U0 113 aa7.71□□□□□ -1.18
LIMCH1-202ENST00000381753 GPR82Q96P67 336 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms