RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ZCCHC14Q8WYQ9 949 aaKnown RBP15.4■□□□□ 0.06
CCDC3-201ENST00000378825 DCTN5Q9BTE1 182 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 ZDHHC11Q9H8X9 412 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 TET2Q6N021 2002 aaPredicted RBP15.4■□□□□ 0.06
CCDC3-201ENST00000378825 A0A1B0GWJ7 208 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 IGHV3-13P01766 116 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 IGHV3-7P01780 117 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 HBZP02008 142 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 OR10J1P30954 320 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 EIF4EBP1Q13541 118 aaPredicted RBP15.4■□□□□ 0.06
CCDC3-201ENST00000378825 ATP6V1FQ16864 119 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 MOB1BQ7L9L4 216 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 H2BFWTQ7Z2G1 175 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 VKORC1L1Q8N0U8 176 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 ZNF703Q9H7S9 590 aaPredicted RBP15.4■□□□□ 0.06
CCDC3-201ENST00000378825 SMG1Q96Q15 3661 aaKnown RBP15.39■□□□□ 0.05
CCDC3-201ENST00000378825 PIGBOS1A0A0B4J2F0 54 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 A0A1W2PNU3 283 aaPredicted RBP15.39■□□□□ 0.05
CCDC3-201ENST00000378825 C9orf172C9J069 976 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 YPEL1O60688 119 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 SERF1AO75920 110 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 NEURL1O76050 574 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 YPEL2Q96QA6 119 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 FAM234AQ9H0X4 552 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 WIPI2Q9Y4P8 454 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 AQP7O14520 342 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 IGHEP01854 428 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 OR9G9P0C7N8 305 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 ACP1P24666 158 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 OR2M7Q8NG81 312 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 PARD6AQ9NPB6 346 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 METRNQ9UJH8 293 aa15.39■□□□□ 0.05
CCDC3-201ENST00000378825 ARR3P36575 388 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 PSG7Q13046 419 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 VWC2Q2TAL6 325 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 TPTE2P1Q5T6R2 138 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 MIC13Q5XKP0 118 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 VN1R17PQ8TDU5 208 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 GALMQ96C23 342 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 HSPB9Q9BQS6 159 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 TMEM106BQ9NUM4 274 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 F6UZH7 168 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 TMPRSS2O15393 492 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 HAND1O96004 215 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 RAC2P15153 192 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 CD1BP29016 333 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 DIRC2Q96SL1 478 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 PPIAL4AQ9Y536 164 aa15.38■□□□□ 0.05
CCDC3-201ENST00000378825 A0A1W2PPV4 95 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 RNF212BA8MTL3 300 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 K7EN84 100 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 SPINK4O60575 86 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 TFPI2P48307 235 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 SPATA31B1PQ5VZV4 182 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 YTHDF2Q9Y5A9 579 aaKnown RBP15.37■□□□□ 0.05
CCDC3-201ENST00000378825 MDFIC2A0A1B0GVS7 189 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 SH2D1BO14796 132 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 KITLGP21583 273 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 FOXL1Q12952 345 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 TRIP6Q15654 476 aaKnown RBP15.37■□□□□ 0.05
CCDC3-201ENST00000378825 SSMEM1Q8WWF3 244 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 RTL8AQ9BWD3 113 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 GP6Q9HCN6 339 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 WDR83OSQ9Y284 106 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 MARCH11A6NNE9 402 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 PDE6DO43924 150 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 GABRA2P47869 451 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 KRTCAP3Q53RY4 240 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 COQ2Q96H96 371 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 PSG11Q9UQ72 335 aa15.37■□□□□ 0.05
CCDC3-201ENST00000378825 BOD1L1Q8NFC6 3051 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 KMT2EQ8IZD2 1858 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 CLDN14O95500 239 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 TIMP3P35625 211 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 ZNF146Q15072 292 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 BOKQ9UMX3 212 aaPredicted RBP15.36■□□□□ 0.05
CCDC3-201ENST00000378825 OR5I1Q13606 314 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 C21orf62-AS1Q17RA5 79 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 DCAF10Q5QP82 559 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 RYDENQ9NUL5 291 aaKnown RBP15.36■□□□□ 0.05
CCDC3-201ENST00000378825 KCNIP1Q9NZI2 227 aa15.36■□□□□ 0.05
CCDC3-201ENST00000378825 PTPRBP23467 1997 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 LNP1A1A4G5 178 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 C17orf112F2Z3M2 114 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 TNFSF10P50591 281 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 ASPHD1Q5U4P2 390 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 FAM103A1Q9BTL3 118 aaKnown RBP15.35■□□□□ 0.05
CCDC3-201ENST00000378825 KCNIP2Q9NS61 270 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 TRAV3A0A0B4J244 114 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 DLEU1O43261 78 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 PROP1O75360 226 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 FOXH1O75593 365 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 ZNF90Q03938 601 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 ABHD17BQ5VST6 288 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 TREML4Q6UXN2 200 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 ABHD12Q8N2K0 398 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 MGST2Q99735 147 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 TTTY12Q9BZ98 90 aa15.35■□□□□ 0.05
CCDC3-201ENST00000378825 MRPL18Q9H0U6 180 aaKnown RBP15.35■□□□□ 0.05
CCDC3-201ENST00000378825 MS4A5Q9H3V2 200 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms