RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PROB1E7EW31 1015 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 GLRXP35754 106 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 OR5AC2Q9NZP5 309 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 CD24P25063 80 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 C9orf106Q8NAJ2 232 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 KIF13BQ9NQT8 1826 aa13.28□□□□□ -0.28
PTPRF-201ENST00000359947 HEATR1Q9H583 2144 aaKnown RBP13.27□□□□□ -0.28
PTPRF-201ENST00000359947 H0YL77 283 aa13.27□□□□□ -0.28
PTPRF-201ENST00000359947 ZNF883P0CG24 379 aa13.27□□□□□ -0.28
PTPRF-201ENST00000359947 ABLIM2Q6H8Q1 611 aa13.27□□□□□ -0.28
PTPRF-201ENST00000359947 ZNF729A6NN14 1252 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-201ENST00000359947 PTGDSP41222 190 aa13.27□□□□□ -0.28
PTPRF-201ENST00000359947 PPP1R17O96001 155 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 NEU4Q8WWR8 484 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-201ENST00000359947 GPR82Q96P67 336 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 C21orf62-AS1Q17RA5 79 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 RIPPLY2Q5TAB7 128 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 FAM159AQ6UWV7 190 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 LSM10Q969L4 123 aaKnown RBP13.27□□□□□ -0.29
PTPRF-201ENST00000359947 GPR146Q96CH1 333 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 PQLC2Q6ZP29 291 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 LHFPL5Q8TAF8 219 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 NPIPB3Q92617 1050 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 SMIM10L1P0DMW3 83 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 IGHV1-2P23083 117 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 NUTF2P61970 127 aaKnown RBP13.27□□□□□ -0.29
PTPRF-201ENST00000359947 PSG9Q00887 426 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 CD69Q07108 199 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 MBNL2Q5VZF2 373 aaKnown RBP13.27□□□□□ -0.29
PTPRF-201ENST00000359947 C1orf162Q8NEQ5 155 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-201ENST00000359947 MARVELD3Q96A59 401 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 SMIM10Q96HG1 83 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 TMEM222Q9H0R3 208 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 DNAJC4Q9NNZ3 241 aa13.27□□□□□ -0.29
PTPRF-201ENST00000359947 ANKRD36A6QL64 1941 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 TSPOP30536 169 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 IBA57Q5T440 356 aaKnown RBP13.26□□□□□ -0.29
PTPRF-201ENST00000359947 SELENOKQ9Y6D0 94 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 TRAV30A0A087WSZ9 112 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 APCDD1LQ8NCL9 501 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 TMEM54Q969K7 222 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 CLEC19AQ6UXS0 136 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 COLCA1Q6ZS62 124 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 OR5P3Q8WZ94 311 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 CD300CQ08708 224 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 DPH3P1Q9H4G8 78 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 GP6Q9HCN6 339 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 RBBP6Q7Z6E9 1792 aaKnown RBP13.26□□□□□ -0.29
PTPRF-201ENST00000359947 KBTBD11O94819 623 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 JPT1Q9UK76 154 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 HSPE1P61604 102 aaKnown RBP13.26□□□□□ -0.29
PTPRF-201ENST00000359947 SLC16A13Q7RTY0 426 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 SGMS2Q8NHU3 365 aa13.26□□□□□ -0.29
PTPRF-201ENST00000359947 SRSF12Q8WXF0 261 aaKnown RBP13.26□□□□□ -0.29
PTPRF-201ENST00000359947 A0A087X0M5 115 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 A0A1B0GX30 115 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 NPFFO15130 113 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 ARL14EPLP0DKL9 152 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 CD99P14209 185 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 SELENOTP62341 195 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 TMEM177Q53S58 311 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 AP4M1O00189 453 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 GPR183P32249 361 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 CBLN2Q8IUK8 224 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 VN1R17PQ8TDU5 208 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 RAB37Q96AX2 223 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 FOXA2Q9Y261 457 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-201ENST00000359947 IGKV1D-42A0A075B6H8 117 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 IGHV2OR16-5A0A0B4J2B6 119 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 ZNF107Q9UII5 783 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-201ENST00000359947 SELENOHQ8IZQ5 122 aaKnown RBP13.25□□□□□ -0.29
PTPRF-201ENST00000359947 DUX3Q96PT4 197 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 VDAC2P45880 294 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-201ENST00000359947 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.25□□□□□ -0.29
PTPRF-201ENST00000359947 FBLL1A6NHQ2 334 aaKnown RBP13.25□□□□□ -0.29
PTPRF-201ENST00000359947 A8MWL6 223 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 PRSS2P07478 247 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 ZNF818PQ6ZRF7 136 aa13.25□□□□□ -0.29
PTPRF-201ENST00000359947 CD74P04233 296 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 C8orf82Q6P1X6 216 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-201ENST00000359947 HKR1P10072 659 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 FBXL7Q9UJT9 491 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 GOLT1AQ6ZVE7 132 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 OR51M1Q9H341 326 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 DPM3Q9P2X0 92 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 METRNQ9UJH8 293 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 SCN10AQ9Y5Y9 1956 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 CACNA1BQ00975 2339 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 NPIPB8E9PQR5 432 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 CEACAM4O75871 244 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 C1QL1O75973 258 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 FAM74A3Q4VXF1 159 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 ACP7Q6ZNF0 438 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 RNASE6Q93091 150 aaKnown RBP13.24□□□□□ -0.29
PTPRF-201ENST00000359947 CYB561D1Q8N8Q1 229 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 PAM16Q9Y3D7 125 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 CACNA1DQ01668 2161 aa13.24□□□□□ -0.29
PTPRF-201ENST00000359947 WISP3O95389 354 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-201ENST00000359947 F12P00748 615 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-201ENST00000359947 MEIG1Q5JSS6 88 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms