RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ECI1P42126 302 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 VBP1P61758 197 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 TNXAQ16473 311 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 VKORC1L1Q8N0U8 176 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 MFSD4AQ8N468 514 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 OR13F1Q8NGS4 319 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 SECTM1Q8WVN6 248 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 ZNF430Q9H8G1 570 aaPredicted RBP14.17□□□□□ -0.14
CLN3-202ENST00000355477 TAS2R8Q9NYW2 309 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 ZMAT5Q9UDW3 170 aaKnown RBP14.17□□□□□ -0.14
CLN3-202ENST00000355477 H3BUA1 57 aa14.16□□□□□ -0.14
CLN3-202ENST00000355477 PPYP01298 95 aa14.16□□□□□ -0.14
CLN3-202ENST00000355477 DEFA5Q01523 94 aa14.16□□□□□ -0.14
CLN3-202ENST00000355477 CDK10Q15131 360 aa14.16□□□□□ -0.14
CLN3-202ENST00000355477 OR5AP2Q8NGF4 316 aa14.16□□□□□ -0.14
CLN3-202ENST00000355477 TCTEX1D2Q8WW35 142 aa14.16□□□□□ -0.14
CLN3-202ENST00000355477 TMEM68Q96MH6 324 aa14.16□□□□□ -0.14
CLN3-202ENST00000355477 PRR25Q96S07 402 aa14.16□□□□□ -0.14
CLN3-202ENST00000355477 MRPS7Q9Y2R9 242 aaKnown RBP14.16□□□□□ -0.14
CLN3-202ENST00000355477 TNFSF12O43508 249 aa14.15□□□□□ -0.14
CLN3-202ENST00000355477 RBMXL2O75526 392 aaKnown RBP14.15□□□□□ -0.14
CLN3-202ENST00000355477 EIF4EP06730 217 aaKnown RBP14.15□□□□□ -0.14
CLN3-202ENST00000355477 SMIM18P0DKX4 95 aa14.15□□□□□ -0.14
CLN3-202ENST00000355477 CBX5P45973 191 aa14.15□□□□□ -0.14
CLN3-202ENST00000355477 TAS2R20P59543 309 aa14.15□□□□□ -0.14
CLN3-202ENST00000355477 TMEM69Q5SWH9 247 aa14.15□□□□□ -0.14
CLN3-202ENST00000355477 SRSF12Q8WXF0 261 aaKnown RBP14.15□□□□□ -0.14
CLN3-202ENST00000355477 ACOT12Q8WYK0 555 aa14.15□□□□□ -0.14
CLN3-202ENST00000355477 PHB2Q99623 299 aa14.15□□□□□ -0.14
CLN3-202ENST00000355477 C13orf42A0A1B0GVH6 325 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 BRI3O95415 125 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 FXYD4P59646 89 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 C10orf55Q5SWW7 151 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 ZNF66Q6ZN08 573 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 ADAD2Q8NCV1 583 aaKnown RBP14.14□□□□□ -0.15
CLN3-202ENST00000355477 OR4S2Q8NH73 311 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 GIMAP1Q8WWP7 306 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 KCTD12Q96CX2 325 aaKnown RBP14.14□□□□□ -0.15
CLN3-202ENST00000355477 TINAGL1Q9GZM7 467 aaPredicted RBP14.14□□□□□ -0.15
CLN3-202ENST00000355477 SLC5A7Q9GZV3 580 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 NAA50Q9GZZ1 169 aaKnown RBP14.14□□□□□ -0.15
CLN3-202ENST00000355477 IFT46Q9NQC8 304 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 COA4Q9NYJ1 87 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 COMMD3Q9UBI1 195 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 ANAPC10Q9UM13 185 aa14.14□□□□□ -0.15
CLN3-202ENST00000355477 ANKRD34BA5PLL1 514 aa14.13□□□□□ -0.15
CLN3-202ENST00000355477 RFX2P48378 723 aa14.13□□□□□ -0.15
CLN3-202ENST00000355477 INSL3P51460 131 aa14.13□□□□□ -0.15
CLN3-202ENST00000355477 MSMO1Q15800 293 aa14.13□□□□□ -0.15
CLN3-202ENST00000355477 ZNF429Q86V71 674 aa14.13□□□□□ -0.15
CLN3-202ENST00000355477 MMD2Q8IY49 270 aa14.13□□□□□ -0.15
CLN3-202ENST00000355477 LSM4Q9Y4Z0 139 aaKnown RBP14.13□□□□□ -0.15
CLN3-202ENST00000355477 A0A0G2JLM5 398 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 SAP30O75446 220 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 OR2A4O95047 310 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 PRH1P02810 166 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 OR9G9P0C7N8 305 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 NAT1P18440 290 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 DYRK1AQ13627 763 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 ACSM6Q6P461 480 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 DHRS11Q6UWP2 260 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 ZNF818PQ6ZRF7 136 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 PUSL1Q8N0Z8 303 aaKnown RBP14.12□□□□□ -0.15
CLN3-202ENST00000355477 OR2A7Q96R45 310 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 EHFQ9NZC4 300 aa14.12□□□□□ -0.15
CLN3-202ENST00000355477 E7EUB6 86 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 SULT1C2O00338 296 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 MPPED1O15442 326 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 ACTL6BO94805 426 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 KBTBD11O94819 623 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 PMP2P02689 132 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 PRSS3P35030 304 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 CTF1Q16619 201 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 SSX9Q7RTT3 188 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 LYSMD2Q8IV50 215 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 ZBTB34Q8NCN2 500 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 TMEM167AQ8TBQ9 72 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 B9D2Q9BPU9 175 aa14.11□□□□□ -0.15
CLN3-202ENST00000355477 RANGRFQ9HD47 186 aaPredicted RBP14.11□□□□□ -0.15
CLN3-202ENST00000355477 ZNF256Q9Y2P7 627 aaPredicted RBP14.11□□□□□ -0.15
CLN3-202ENST00000355477 A0A1B0GW64 132 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 HMX3A6NHT5 357 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 CREBL2O60519 120 aaPredicted RBP14.1□□□□□ -0.15
CLN3-202ENST00000355477 HPGDSO60760 199 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 TRBV12-3P01733 135 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 APOA1P02647 267 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 ELK1P19419 428 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 GNRHRP30968 328 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 KIR2DS2P43631 304 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 ZNF45Q02386 682 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 CD69Q07108 199 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 C11orf87Q6NUJ2 197 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 ZNF343Q6P1L6 599 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 TMEM17Q86X19 198 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 ANKRD13BQ86YJ7 626 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 SPAG16Q8N0X2 631 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 SPIN2AQ99865 258 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 SPIN2BQ9BPZ2 258 aa14.1□□□□□ -0.15
CLN3-202ENST00000355477 TENM3Q9P273 2699 aa14.09□□□□□ -0.15
CLN3-202ENST00000355477 TEX22C9J3V5 150 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms