RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MPDU1O75352 247 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 CRYAAP02489 173 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 UBE2G2P60604 165 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 AARDQ4LEZ3 155 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 MORN2Q502X0 79 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 FDCSPQ8NFU4 85 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 RAB1CQ92928 201 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 IGHV1-18A0A0C4DH31 117 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 IGLV1-44P01699 117 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 NPPCP23582 126 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 PKIAP61925 76 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 PPP1R35Q8TAP8 253 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 TMEM170AQ8WVE7 144 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 SARAFQ96BY9 339 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 ACY3Q96HD9 319 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 PRR33A8MZF0 331 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 TSTD3H0UI37 97 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 NKX2-8O15522 239 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 GGCTO75223 188 aaKnown RBP15.54■□□□□ 0.08
CPSF3-201ENST00000238112 PROP1O75360 226 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 EGR1P18146 543 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 BMP5P22003 454 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 P2RY6Q15077 328 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 OR5R1Q8NH85 324 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 DUSP13Q9UII6 198 aa15.54■□□□□ 0.08
CPSF3-201ENST00000238112 IGKV1D-17A0A075B6S4 117 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 AMBPP02760 352 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 CHRNA7P36544 502 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 ATP5G3P48201 142 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 TMEM249Q2WGJ8 235 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 PDLIM3Q53GG5 364 aaPredicted RBP15.53■□□□□ 0.08
CPSF3-201ENST00000238112 C1orf174Q8IYL3 243 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 FAM216AQ8WUB2 273 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 KCNIP2Q9NS61 270 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 FUT9Q9Y231 359 aa15.53■□□□□ 0.08
CPSF3-201ENST00000238112 DVL1O14640 695 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 MGST3O14880 152 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 YPEL1O60688 119 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 CD82P27701 267 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 GNB1P62873 340 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 COA6Q5JTJ3 125 aaKnown RBP15.52■□□□□ 0.08
CPSF3-201ENST00000238112 ACTL10Q5JWF8 245 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 LINC01551Q86U37 167 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 VKORC1L1Q8N0U8 176 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 OR52E5Q8NH55 327 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 YPEL2Q96QA6 119 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 S1PR3Q99500 378 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 PATZ1Q9HBE1 687 aaKnown RBP15.52■□□□□ 0.08
CPSF3-201ENST00000238112 PLSCR4Q9NRQ2 329 aa15.52■□□□□ 0.08
CPSF3-201ENST00000238112 SRRM5B3KS81 715 aa15.52■□□□□ 0.07
CPSF3-201ENST00000238112 F6UZH7 168 aa15.52■□□□□ 0.07
CPSF3-201ENST00000238112 GPX4P36969 197 aaPredicted RBP15.52■□□□□ 0.07
CPSF3-201ENST00000238112 OPRK1P41145 380 aa15.52■□□□□ 0.07
CPSF3-201ENST00000238112 RPL39P5Q59GN2 51 aa15.52■□□□□ 0.07
CPSF3-201ENST00000238112 TREML4Q6UXN2 200 aa15.52■□□□□ 0.07
CPSF3-201ENST00000238112 CISD2Q8N5K1 135 aaKnown RBP15.52■□□□□ 0.07
CPSF3-201ENST00000238112 RNASEH2CQ8TDP1 164 aaKnown RBP15.52■□□□□ 0.07
CPSF3-201ENST00000238112 TMEM37Q8WXS4 190 aa15.52■□□□□ 0.07
CPSF3-201ENST00000238112 RHOVQ96L33 236 aa15.52■□□□□ 0.07
CPSF3-201ENST00000238112 RRHO14718 337 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 RBFOX2O43251 390 aaKnown RBP eCLIP15.51■□□□□ 0.07
CPSF3-201ENST00000238112 NDUFB4O95168 129 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 IGHV3-13P01766 116 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 IGHV3-7P01780 117 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 TYMSP04818 313 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 JOSD1Q15040 202 aaPredicted RBP15.51■□□□□ 0.07
CPSF3-201ENST00000238112 Q8TCH9 128 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 SDSLQ96GA7 329 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 OPN3Q9H1Y3 402 aaPredicted RBP15.51■□□□□ 0.07
CPSF3-201ENST00000238112 PROCRQ9UNN8 238 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 TRAV17A0A0B4J275 112 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 A0A1B0GWJ7 208 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 CD99P14209 185 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 FAM78BQ5VT40 261 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 BHLHA15Q7RTS1 189 aaPredicted RBP15.51■□□□□ 0.07
CPSF3-201ENST00000238112 FAM90A1Q86YD7 464 aa15.51■□□□□ 0.07
CPSF3-201ENST00000238112 IGHV3OR15-7A0A075B7D8 119 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 TMPRSS2O15393 492 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 VDAC2P45880 294 aaPredicted RBP15.5■□□□□ 0.07
CPSF3-201ENST00000238112 NUBP1P53384 320 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 LCN2P80188 198 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 TRIP6Q15654 476 aaKnown RBP15.5■□□□□ 0.07
CPSF3-201ENST00000238112 PRO1933Q9H354 126 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 MS4A5Q9H3V2 200 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 TMEM140Q9NV12 185 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 PXMP4Q9Y6I8 212 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 GALR2O43603 387 aaPredicted RBP15.5■□□□□ 0.07
CPSF3-201ENST00000238112 DDTP30046 118 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 KIR2DS2P43631 304 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 RELBQ01201 579 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 SRSF6Q13247 344 aaKnown RBP15.5■□□□□ 0.07
CPSF3-201ENST00000238112 MGST2Q99735 147 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 DERL1Q9BUN8 251 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 IFI27L2Q9H2X8 130 aa15.5■□□□□ 0.07
CPSF3-201ENST00000238112 ZNF71Q9NQZ8 489 aaPredicted RBP15.5■□□□□ 0.07
CPSF3-201ENST00000238112 AURKAIP1Q9NWT8 199 aaPredicted RBP15.5■□□□□ 0.07
CPSF3-201ENST00000238112 GFRA3O60609 400 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 ARL14EPLP0DKL9 152 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 PDLIM4P50479 330 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 ALKBH2Q6NS38 261 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms