RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	RAB11FIP3	O75154	756 aa		32.83	■■■□□ 2.85
VEGFA-231	ENST00000640499	PRDX5	P30044	214 aa		32.83	■■■□□ 2.85
VEGFA-231	ENST00000640499	MCAM	P43121	646 aa		32.83	■■■□□ 2.85
VEGFA-231	ENST00000640499	KIF1BP	Q96EK5	621 aa		32.83	■■■□□ 2.85
VEGFA-231	ENST00000640499	DCTPP1	Q9H773	170 aa		32.83	■■■□□ 2.85
VEGFA-231	ENST00000640499	CREBZF	Q9NS37	354 aa		32.83	■■■□□ 2.85
VEGFA-231	ENST00000640499	AKAP11	Q9UKA4	1901 aa		32.83	■■■□□ 2.85
VEGFA-231	ENST00000640499	TMEM88B	A6NKF7	163 aa		32.82	■■■□□ 2.84
VEGFA-231	ENST00000640499	MRI	Q9BWK5	157 aa		32.82	■■■□□ 2.84
VEGFA-231	ENST00000640499	HDLBP	Q00341	1268 aa	Known RBP	32.81	■■■□□ 2.84
VEGFA-231	ENST00000640499	AACS	Q86V21	672 aa		32.81	■■■□□ 2.84
VEGFA-231	ENST00000640499	SPATA5	Q8NB90	893 aa		32.81	■■■□□ 2.84
VEGFA-231	ENST00000640499	ECM29	Q5VYK3	1845 aa		32.81	■■■□□ 2.84
VEGFA-231	ENST00000640499	UQCRFS1P1	P0C7P4	283 aa		32.8	■■■□□ 2.84
VEGFA-231	ENST00000640499	SULF1	Q8IWU6	871 aa		32.8	■■■□□ 2.84
VEGFA-231	ENST00000640499	RBM5	P52756	815 aa	Known RBP eCLIP	32.79	■■■□□ 2.84	1e-9	■□□□□ 9.1
VEGFA-231	ENST00000640499	EXOC6	Q8TAG9	804 aa		32.79	■■■□□ 2.84
VEGFA-231	ENST00000640499	ZNF512B	Q96KM6	892 aa	Predicted RBP	32.79	■■■□□ 2.84
VEGFA-231	ENST00000640499	CELF2	O95319	508 aa	Known RBP	32.78	■■■□□ 2.84
VEGFA-231	ENST00000640499	TBC1D9	Q6ZT07	1266 aa		32.78	■■■□□ 2.84
VEGFA-231	ENST00000640499	CLRN2	A0PK11	232 aa		32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	CCDC158	Q5M9N0	1113 aa		32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	TTC39A	Q5SRH9	613 aa		32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	PRAMEF18	Q5VWM3	479 aa		32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	APOBEC3H	Q6NTF7	200 aa	Known RBP	32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	CDCA5	Q96FF9	252 aa		32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	ZDHHC15	Q96MV8	337 aa		32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	TDRD3	Q9H7E2	651 aa	Known RBP	32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	SNRK	Q9NRH2	765 aa		32.77	■■■□□ 2.84
VEGFA-231	ENST00000640499	SMARCA5	O60264	1052 aa	Predicted RBP	32.76	■■■□□ 2.83
VEGFA-231	ENST00000640499	LDHB	P07195	334 aa	Known RBP	32.76	■■■□□ 2.83
VEGFA-231	ENST00000640499	DIXDC1	Q155Q3	683 aa		32.76	■■■□□ 2.83
VEGFA-231	ENST00000640499	ZNF384	Q8TF68	577 aa		32.76	■■■□□ 2.83
VEGFA-231	ENST00000640499	TEKT1	Q969V4	418 aa		32.76	■■■□□ 2.83
VEGFA-231	ENST00000640499	SPDYE2	Q495Y8	402 aa		32.75	■■■□□ 2.83
VEGFA-231	ENST00000640499	HHIPL2	Q6UWX4	724 aa		32.75	■■■□□ 2.83
VEGFA-231	ENST00000640499	CLASRP	Q8N2M8	674 aa	Known RBP	32.75	■■■□□ 2.83
VEGFA-231	ENST00000640499	ZNF408	Q9H9D4	720 aa		32.75	■■■□□ 2.83
VEGFA-231	ENST00000640499	ZNF70	Q9UC06	446 aa	Predicted RBP	32.75	■■■□□ 2.83
VEGFA-231	ENST00000640499	ABCF2	Q9UG63	623 aa		32.75	■■■□□ 2.83
VEGFA-231	ENST00000640499	MAST3	O60307	1309 aa		32.74	■■■□□ 2.83
VEGFA-231	ENST00000640499	DAGLA	Q9Y4D2	1042 aa		32.73	■■■□□ 2.83
VEGFA-231	ENST00000640499	CYP2E1	P05181	493 aa	Predicted RBP	32.72	■■■□□ 2.83
VEGFA-231	ENST00000640499	APOBEC3F	Q8IUX4	373 aa	Known RBP	32.72	■■■□□ 2.83
VEGFA-231	ENST00000640499	ZGPAT	Q8N5A5	531 aa	Known RBP	32.72	■■■□□ 2.83
VEGFA-231	ENST00000640499	LRRCC1	Q9C099	1032 aa		32.72	■■■□□ 2.83
VEGFA-231	ENST00000640499	ZAP70	P43403	619 aa		32.71	■■■□□ 2.83
VEGFA-231	ENST00000640499	DEFB129	Q9H1M3	183 aa		32.71	■■■□□ 2.83
VEGFA-231	ENST00000640499	NDUFB9	Q9Y6M9	179 aa		32.71	■■■□□ 2.83
VEGFA-231	ENST00000640499	MYO1B	O43795	1136 aa		32.7	■■■□□ 2.83
VEGFA-231	ENST00000640499	BCL11A	Q9H165	835 aa		32.7	■■■□□ 2.83
VEGFA-231	ENST00000640499	TLL2	Q9Y6L7	1015 aa		32.7	■■■□□ 2.83
VEGFA-231	ENST00000640499	MYO5A	Q9Y4I1	1855 aa	Known RBP	32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	MYH2	Q9UKX2	1941 aa		32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	IRX6	P78412	446 aa	Predicted RBP	32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	MECOM	Q03112	1051 aa		32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	AAMP	Q13685	434 aa		32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	ERICH6	Q7L0X2	663 aa		32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	KLRG1	Q96E93	195 aa		32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	VEZT	Q9HBM0	779 aa		32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	MKRN1	Q9UHC7	482 aa	Known RBP	32.69	■■■□□ 2.82
VEGFA-231	ENST00000640499	IFIT2	P09913	472 aa	Known RBP	32.68	■■■□□ 2.82
VEGFA-231	ENST00000640499	HDAC1	Q13547	482 aa	Predicted RBP	32.68	■■■□□ 2.82
VEGFA-231	ENST00000640499	SPTY2D1	Q68D10	685 aa	Predicted RBP	32.68	■■■□□ 2.82
VEGFA-231	ENST00000640499	SAPCD2	Q86UD0	394 aa		32.68	■■■□□ 2.82
VEGFA-231	ENST00000640499	PIH1D3	Q9NQM4	214 aa	Known RBP	32.68	■■■□□ 2.82
VEGFA-231	ENST00000640499	GAK	O14976	1311 aa		32.68	■■■□□ 2.82
VEGFA-231	ENST00000640499	RASSF10	A6NK89	507 aa		32.67	■■■□□ 2.82
VEGFA-231	ENST00000640499	CACNB3	P54284	484 aa		32.67	■■■□□ 2.82
VEGFA-231	ENST00000640499	NSUN4	Q96CB9	384 aa	Known RBP	32.67	■■■□□ 2.82
VEGFA-231	ENST00000640499	FAM163A	Q96GL9	167 aa	Predicted RBP	32.67	■■■□□ 2.82
VEGFA-231	ENST00000640499	ABT1	Q9ULW3	272 aa	Known RBP	32.67	■■■□□ 2.82
VEGFA-231	ENST00000640499	CNTNAP1	P78357	1384 aa		32.67	■■■□□ 2.82
VEGFA-231	ENST00000640499	ANTXR1	Q9H6X2	564 aa		32.66	■■■□□ 2.82
VEGFA-231	ENST00000640499	RASA3	Q14644	834 aa		32.65	■■■□□ 2.82
VEGFA-231	ENST00000640499	CDC42EP5	Q6NZY7	148 aa		32.65	■■■□□ 2.82
VEGFA-231	ENST00000640499	DZIP1	Q86YF9	867 aa	Known RBP	32.65	■■■□□ 2.82
VEGFA-231	ENST00000640499	GBA2	Q9HCG7	927 aa	Predicted RBP	32.65	■■■□□ 2.82
VEGFA-231	ENST00000640499	TCP10L2	B9ZVM9	353 aa		32.64	■■■□□ 2.82
VEGFA-231	ENST00000640499	DEFB115	Q30KQ5	88 aa		32.64	■■■□□ 2.82
VEGFA-231	ENST00000640499	CDAN1	Q8IWY9	1227 aa		32.64	■■■□□ 2.82
VEGFA-231	ENST00000640499	TEPSIN	Q96N21	525 aa		32.64	■■■□□ 2.82
VEGFA-231	ENST00000640499	SSC5D	A1L4H1	1573 aa		32.63	■■■□□ 2.81
VEGFA-231	ENST00000640499	MOB2	Q70IA6	237 aa		32.63	■■■□□ 2.81
VEGFA-231	ENST00000640499	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	32.62	■■■□□ 2.81
VEGFA-231	ENST00000640499	RAI14	Q9P0K7	980 aa		32.62	■■■□□ 2.81
VEGFA-231	ENST00000640499	LRP2BP	Q9P2M1	347 aa		32.62	■■■□□ 2.81
VEGFA-231	ENST00000640499	PPP2R3B	Q9Y5P8	575 aa		32.62	■■■□□ 2.81
VEGFA-231	ENST00000640499	MROH7-TTC4	A0A0A0MT08	1334 aa		32.61	■■■□□ 2.81
VEGFA-231	ENST00000640499	IGHD	P01880	384 aa		32.61	■■■□□ 2.81
VEGFA-231	ENST00000640499	VEGFB	P49765	207 aa		32.61	■■■□□ 2.81
VEGFA-231	ENST00000640499	NBPF12	Q5TAG4	269 aa	Predicted RBP	32.61	■■■□□ 2.81
VEGFA-231	ENST00000640499	GPR75-ASB3	A0A0A6YYF3	556 aa		32.6	■■■□□ 2.81
VEGFA-231	ENST00000640499	C2orf69	Q8N8R5	385 aa		32.6	■■■□□ 2.81
VEGFA-231	ENST00000640499	TMEM39B	Q9GZU3	492 aa		32.6	■■■□□ 2.81
VEGFA-231	ENST00000640499	USP40	Q9NVE5	1235 aa		32.6	■■■□□ 2.81
VEGFA-231	ENST00000640499	ATP5J	P18859	108 aa		32.59	■■■□□ 2.81
VEGFA-231	ENST00000640499	NFIA	Q12857	509 aa		32.59	■■■□□ 2.81
VEGFA-231	ENST00000640499	FKBP1C	Q5VVH2	108 aa		32.59	■■■□□ 2.81
VEGFA-231	ENST00000640499	FZD1	Q9UP38	647 aa		32.59	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms