RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 IGHDP01880 384 aa24.83■■□□□ 1.57
PTCD3-220ENST00000627371 LDHBP07195 334 aaKnown RBP24.83■■□□□ 1.57
PTCD3-220ENST00000627371 HDLBPQ00341 1268 aaKnown RBP24.83■■□□□ 1.57
PTCD3-220ENST00000627371 DLGAP5Q15398 846 aa24.83■■□□□ 1.57
PTCD3-220ENST00000627371 CRKP46108 304 aa24.82■■□□□ 1.56
PTCD3-220ENST00000627371 NBPF9Q3BBW0 867 aa24.82■■□□□ 1.56
PTCD3-220ENST00000627371 SMC5Q8IY18 1101 aa24.82■■□□□ 1.56
PTCD3-220ENST00000627371 CNTROBQ8N137 903 aa24.82■■□□□ 1.56
PTCD3-220ENST00000627371 MRIQ9BWK5 157 aa24.82■■□□□ 1.56
PTCD3-220ENST00000627371 SNRKQ9NRH2 765 aa24.82■■□□□ 1.56
PTCD3-220ENST00000627371 GGA3Q9NZ52 723 aa24.82■■□□□ 1.56
PTCD3-220ENST00000627371 ABCF2Q9UG63 623 aa24.82■■□□□ 1.56
PTCD3-220ENST00000627371 ASTN2O75129 1339 aaPredicted RBP24.82■■□□□ 1.56
PTCD3-220ENST00000627371 SPDYE2BA6NHP3 402 aa24.81■■□□□ 1.56
PTCD3-220ENST00000627371 SPDYE6P0CI01 402 aa24.81■■□□□ 1.56
PTCD3-220ENST00000627371 SPTY2D1Q68D10 685 aaPredicted RBP24.81■■□□□ 1.56
PTCD3-220ENST00000627371 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.81■■□□□ 1.56
PTCD3-220ENST00000627371 TEKT1Q969V4 418 aa24.81■■□□□ 1.56
PTCD3-220ENST00000627371 PCDHAC2Q9Y5I4 1007 aa24.81■■□□□ 1.56
PTCD3-220ENST00000627371 ITGBL1O95965 494 aaPredicted RBP24.8■■□□□ 1.56
PTCD3-220ENST00000627371 RBM5P52756 815 aaKnown RBP eCLIP24.8■■□□□ 1.56
PTCD3-220ENST00000627371 ANGEL2Q5VTE6 544 aaKnown RBP24.8■■□□□ 1.56
PTCD3-220ENST00000627371 PITPNM2Q9BZ72 1349 aa24.8■■□□□ 1.56
PTCD3-220ENST00000627371 ZAP70P43403 619 aa24.79■■□□□ 1.56
PTCD3-220ENST00000627371 ANKRD45Q5TZF3 282 aa24.79■■□□□ 1.56
PTCD3-220ENST00000627371 TBC1D9Q6ZT07 1266 aa24.79■■□□□ 1.56
PTCD3-220ENST00000627371 ERICH6Q7L0X2 663 aa24.79■■□□□ 1.56
PTCD3-220ENST00000627371 DCPSQ96C86 337 aaKnown RBP24.79■■□□□ 1.56
PTCD3-220ENST00000627371 PRMT6Q96LA8 375 aaPredicted RBP24.79■■□□□ 1.56
PTCD3-220ENST00000627371 CYP2E1P05181 493 aaPredicted RBP24.78■■□□□ 1.56
PTCD3-220ENST00000627371 HHIPL2Q6UWX4 724 aa24.78■■□□□ 1.56
PTCD3-220ENST00000627371 ZDHHC15Q96MV8 337 aa24.78■■□□□ 1.56
PTCD3-220ENST00000627371 ZBTB47Q9UFB7 747 aaPredicted RBP24.78■■□□□ 1.56
PTCD3-220ENST00000627371 PASKQ96RG2 1323 aa24.78■■□□□ 1.56
PTCD3-220ENST00000627371 MYO1BO43795 1136 aa24.77■■□□□ 1.56
PTCD3-220ENST00000627371 ATP5JP18859 108 aa24.77■■□□□ 1.56
PTCD3-220ENST00000627371 CDC37L1Q7L3B6 337 aa24.77■■□□□ 1.56
PTCD3-220ENST00000627371 DZIP1Q86YF9 867 aaKnown RBP24.77■■□□□ 1.56
PTCD3-220ENST00000627371 GLIS2Q9BZE0 524 aaPredicted RBP24.77■■□□□ 1.56
PTCD3-220ENST00000627371 MYH7P12883 1935 aa24.76■■□□□ 1.55
PTCD3-220ENST00000627371 DIXDC1Q155Q3 683 aa24.76■■□□□ 1.55
PTCD3-220ENST00000627371 KRT26Q7Z3Y9 468 aa24.76■■□□□ 1.55
PTCD3-220ENST00000627371 ECHDC1Q9NTX5 307 aa24.76■■□□□ 1.55
PTCD3-220ENST00000627371 IGSF3O75054 1194 aa24.75■■□□□ 1.55
PTCD3-220ENST00000627371 SULF1Q8IWU6 871 aa24.75■■□□□ 1.55
PTCD3-220ENST00000627371 GPATCH3Q96I76 525 aa24.75■■□□□ 1.55
PTCD3-220ENST00000627371 LRP2BPQ9P2M1 347 aa24.75■■□□□ 1.55
PTCD3-220ENST00000627371 NDUFB9Q9Y6M9 179 aa24.75■■□□□ 1.55
PTCD3-220ENST00000627371 AOX1Q06278 1338 aa24.75■■□□□ 1.55
PTCD3-220ENST00000627371 MECOMQ03112 1051 aa24.74■■□□□ 1.55
PTCD3-220ENST00000627371 APOBEC3FQ8IUX4 373 aaKnown RBP24.74■■□□□ 1.55
PTCD3-220ENST00000627371 SLF2Q8IX21 1173 aa24.74■■□□□ 1.55
PTCD3-220ENST00000627371 NSUN4Q96CB9 384 aaKnown RBP24.74■■□□□ 1.55
PTCD3-220ENST00000627371 PIH1D3Q9NQM4 214 aaKnown RBP24.74■■□□□ 1.55
PTCD3-220ENST00000627371 RAI14Q9P0K7 980 aa24.74■■□□□ 1.55
PTCD3-220ENST00000627371 DAGLAQ9Y4D2 1042 aa24.74■■□□□ 1.55
PTCD3-220ENST00000627371 GAKO14976 1311 aa24.74■■□□□ 1.55
PTCD3-220ENST00000627371 TTC41PQ6P2S7 1318 aa24.73■■□□□ 1.55
PTCD3-220ENST00000627371 ADM5C9JUS6 153 aa24.73■■□□□ 1.55
PTCD3-220ENST00000627371 TRAF5O00463 557 aa24.73■■□□□ 1.55
PTCD3-220ENST00000627371 NEFLP07196 543 aa24.73■■□□□ 1.55
PTCD3-220ENST00000627371 SPDYE2Q495Y8 402 aa24.73■■□□□ 1.55
PTCD3-220ENST00000627371 APOBEC3HQ6NTF7 200 aaKnown RBP24.73■■□□□ 1.55
PTCD3-220ENST00000627371 USP48Q86UV5 1035 aa24.73■■□□□ 1.55
PTCD3-220ENST00000627371 ZNF384Q8TF68 577 aa24.73■■□□□ 1.55
PTCD3-220ENST00000627371 BOLA2Q9H3K6 86 aa24.73■■□□□ 1.55
PTCD3-220ENST00000627371 SALL3Q9BXA9 1300 aa24.72■■□□□ 1.55
PTCD3-220ENST00000627371 CLRN2A0PK11 232 aa24.72■■□□□ 1.55
PTCD3-220ENST00000627371 HSPA6P17066 643 aa24.72■■□□□ 1.55
PTCD3-220ENST00000627371 GSTO1P78417 241 aa24.72■■□□□ 1.55
PTCD3-220ENST00000627371 TTF1Q15361 905 aaPredicted RBP24.72■■□□□ 1.55
PTCD3-220ENST00000627371 B4GALNT3Q6L9W6 998 aa24.72■■□□□ 1.55
PTCD3-220ENST00000627371 OTUD7AQ8TE49 926 aaPredicted RBP24.72■■□□□ 1.55
PTCD3-220ENST00000627371 FAM163AQ96GL9 167 aaPredicted RBP24.72■■□□□ 1.55
PTCD3-220ENST00000627371 DNAJC2Q99543 621 aaKnown RBP24.72■■□□□ 1.55
PTCD3-220ENST00000627371 HAUS7Q99871 368 aa24.72■■□□□ 1.55
PTCD3-220ENST00000627371 ANTXR1Q9H6X2 564 aa24.72■■□□□ 1.55
PTCD3-220ENST00000627371 TDRD3Q9H7E2 651 aaKnown RBP24.72■■□□□ 1.55
PTCD3-220ENST00000627371 MROH7-TTC4A0A0A0MT08 1334 aa24.71■■□□□ 1.55
PTCD3-220ENST00000627371 APLP1P51693 650 aa24.71■■□□□ 1.55
PTCD3-220ENST00000627371 NUCB1Q02818 461 aa24.71■■□□□ 1.55
PTCD3-220ENST00000627371 LNPKQ9C0E8 428 aa24.71■■□□□ 1.55
PTCD3-220ENST00000627371 ZNF70Q9UC06 446 aaPredicted RBP24.71■■□□□ 1.55
PTCD3-220ENST00000627371 MX1P20591 662 aa24.7■■□□□ 1.54
PTCD3-220ENST00000627371 FMR1Q06787 632 aaKnown RBP eCLIP24.7■■□□□ 1.54
PTCD3-220ENST00000627371 TSHZ3Q63HK5 1081 aa24.7■■□□□ 1.54
PTCD3-220ENST00000627371 CHD1LQ86WJ1 897 aa24.7■■□□□ 1.54
PTCD3-220ENST00000627371 VEZTQ9HBM0 779 aa24.7■■□□□ 1.54
PTCD3-220ENST00000627371 SCAF8Q9UPN6 1271 aaKnown RBP24.7■■□□□ 1.54
PTCD3-220ENST00000627371 GOLIM4O00461 696 aa24.69■■□□□ 1.54
PTCD3-220ENST00000627371 IDH1O75874 414 aaKnown RBP24.69■■□□□ 1.54
PTCD3-220ENST00000627371 LDHCP07864 332 aa24.69■■□□□ 1.54
PTCD3-220ENST00000627371 PAG1Q9NWQ8 432 aa24.69■■□□□ 1.54
PTCD3-220ENST00000627371 CDK5RAP2Q96SN8 1893 aa24.68■■□□□ 1.54
PTCD3-220ENST00000627371 MAP3K12Q12852 859 aa24.68■■□□□ 1.54
PTCD3-220ENST00000627371 NAA16Q6N069 864 aaPredicted RBP24.68■■□□□ 1.54
PTCD3-220ENST00000627371 DLK2Q6UY11 383 aa24.68■■□□□ 1.54
PTCD3-220ENST00000627371 EDC3Q96F86 508 aaKnown RBP24.68■■□□□ 1.54
PTCD3-220ENST00000627371 GPR75-ASB3A0A0A6YYF3 556 aa24.67■■□□□ 1.54
PTCD3-220ENST00000627371 ERC2O15083 957 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms