RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 IGSF3O75054 1194 aa31.54■■■□□ 2.64
TRIM28-204ENST00000594806 SPDYE6P0CI01 402 aa31.54■■■□□ 2.64
TRIM28-204ENST00000594806 MCAMP43121 646 aa31.54■■■□□ 2.64
TRIM28-204ENST00000594806 RBM5P52756 815 aaKnown RBP eCLIP31.54■■■□□ 2.642e-6■■■■□ 22.7
TRIM28-204ENST00000594806 ANGEL2Q5VTE6 544 aaKnown RBP31.54■■■□□ 2.64
TRIM28-204ENST00000594806 SULF1Q8IWU6 871 aa31.54■■■□□ 2.64
TRIM28-204ENST00000594806 TEKT1Q969V4 418 aa31.54■■■□□ 2.64
TRIM28-204ENST00000594806 TLR7Q9NYK1 1049 aaKnown RBP31.54■■■□□ 2.64
TRIM28-204ENST00000594806 AKAP11Q9UKA4 1901 aa31.53■■■□□ 2.64
TRIM28-204ENST00000594806 CRKP46108 304 aa31.53■■■□□ 2.64
TRIM28-204ENST00000594806 GRIK5Q16478 980 aa31.53■■■□□ 2.64
TRIM28-204ENST00000594806 HHIPL2Q6UWX4 724 aa31.53■■■□□ 2.64
TRIM28-204ENST00000594806 KRT26Q7Z3Y9 468 aa31.53■■■□□ 2.64
TRIM28-204ENST00000594806 GCC1Q96CN9 775 aa31.53■■■□□ 2.64
TRIM28-204ENST00000594806 RWDD1Q9H446 243 aaPredicted RBP31.52■■■□□ 2.64
TRIM28-204ENST00000594806 TRPM7Q96QT4 1865 aa31.52■■■□□ 2.64
TRIM28-204ENST00000594806 PRMT6Q96LA8 375 aaPredicted RBP31.51■■■□□ 2.63
TRIM28-204ENST00000594806 GLIS2Q9BZE0 524 aaPredicted RBP31.51■■■□□ 2.63
TRIM28-204ENST00000594806 PRDX5P30044 214 aa31.5■■■□□ 2.63
TRIM28-204ENST00000594806 ERICH6Q7L0X2 663 aa31.5■■■□□ 2.63
TRIM28-204ENST00000594806 APOBEC3FQ8IUX4 373 aaKnown RBP31.5■■■□□ 2.63
TRIM28-204ENST00000594806 SLF2Q8IX21 1173 aa31.5■■■□□ 2.63
TRIM28-204ENST00000594806 PPIL4Q8WUA2 492 aaKnown RBP eCLIP31.5■■■□□ 2.63
TRIM28-204ENST00000594806 ZDHHC15Q96MV8 337 aa31.5■■■□□ 2.63
TRIM28-204ENST00000594806 ABCF2Q9UG63 623 aa31.5■■■□□ 2.63
TRIM28-204ENST00000594806 USP48Q86UV5 1035 aa31.49■■■□□ 2.63
TRIM28-204ENST00000594806 ASTN2O75129 1339 aaPredicted RBP31.49■■■□□ 2.63
TRIM28-204ENST00000594806 PI16Q6UXB8 463 aa31.47■■■□□ 2.63
TRIM28-204ENST00000594806 DZIP1Q86YF9 867 aaKnown RBP31.46■■■□□ 2.63
TRIM28-204ENST00000594806 CREBZFQ9NS37 354 aa31.46■■■□□ 2.63
TRIM28-204ENST00000594806 ZBTB47Q9UFB7 747 aaPredicted RBP31.46■■■□□ 2.63
TRIM28-204ENST00000594806 TMEM88BA6NKF7 163 aa31.45■■■□□ 2.63
TRIM28-204ENST00000594806 TRAF5O00463 557 aa31.45■■■□□ 2.63
TRIM28-204ENST00000594806 SMARCA5O60264 1052 aaPredicted RBP31.45■■■□□ 2.63
TRIM28-204ENST00000594806 SPDYE2Q495Y8 402 aa31.45■■■□□ 2.63
TRIM28-204ENST00000594806 FAM163AQ96GL9 167 aaPredicted RBP31.45■■■□□ 2.63
TRIM28-204ENST00000594806 PCDHAC2Q9Y5I4 1007 aa31.45■■■□□ 2.63
TRIM28-204ENST00000594806 MYH2Q9UKX2 1941 aa31.45■■■□□ 2.62
TRIM28-204ENST00000594806 IRX6P78412 446 aaPredicted RBP31.44■■■□□ 2.62
TRIM28-204ENST00000594806 GSTO1P78417 241 aa31.44■■■□□ 2.62
TRIM28-204ENST00000594806 SNRKQ9NRH2 765 aa31.44■■■□□ 2.62
TRIM28-204ENST00000594806 LRP2BPQ9P2M1 347 aa31.44■■■□□ 2.62
TRIM28-204ENST00000594806 CYP2E1P05181 493 aaPredicted RBP31.43■■■□□ 2.62
TRIM28-204ENST00000594806 LDHCP07864 332 aa31.43■■■□□ 2.62
TRIM28-204ENST00000594806 ZAP70P43403 619 aa31.43■■■□□ 2.62
TRIM28-204ENST00000594806 TNFAIP1Q13829 316 aa31.43■■■□□ 2.62
TRIM28-204ENST00000594806 PPP2R3BQ9Y5P8 575 aa31.43■■■□□ 2.62
TRIM28-204ENST00000594806 ADM5C9JUS6 153 aa31.42■■■□□ 2.62
TRIM28-204ENST00000594806 ATP5JP18859 108 aa31.42■■■□□ 2.62
TRIM28-204ENST00000594806 APOBEC3HQ6NTF7 200 aaKnown RBP31.42■■■□□ 2.62
TRIM28-204ENST00000594806 TMED8Q6PL24 325 aaPredicted RBP31.42■■■□□ 2.62
TRIM28-204ENST00000594806 TBC1D9Q6ZT07 1266 aa31.42■■■□□ 2.62
TRIM28-204ENST00000594806 GPATCH3Q96I76 525 aa31.42■■■□□ 2.62
TRIM28-204ENST00000594806 BCL11AQ9H165 835 aa31.42■■■□□ 2.62
TRIM28-204ENST00000594806 ZNF70Q9UC06 446 aaPredicted RBP31.42■■■□□ 2.62
TRIM28-204ENST00000594806 DAGLAQ9Y4D2 1042 aa31.42■■■□□ 2.62
TRIM28-204ENST00000594806 TTF1Q15361 905 aaPredicted RBP31.41■■■□□ 2.62
TRIM28-204ENST00000594806 DIXDC1Q155Q3 683 aa31.41■■■□□ 2.62
TRIM28-204ENST00000594806 TDRD3Q9H7E2 651 aaKnown RBP31.41■■■□□ 2.62
TRIM28-204ENST00000594806 TMOD2Q9NZR1 351 aa31.41■■■□□ 2.62
TRIM28-204ENST00000594806 RAI14Q9P0K7 980 aa31.41■■■□□ 2.62
TRIM28-204ENST00000594806 GAKO14976 1311 aa31.41■■■□□ 2.62
TRIM28-204ENST00000594806 CLRN2A0PK11 232 aa31.4■■■□□ 2.62
TRIM28-204ENST00000594806 CELF2O95319 508 aaKnown RBP31.4■■■□□ 2.62
TRIM28-204ENST00000594806 CENPBP07199 599 aaPredicted RBP31.4■■■□□ 2.62
TRIM28-204ENST00000594806 MECOMQ03112 1051 aa31.4■■■□□ 2.62
TRIM28-204ENST00000594806 SMC5Q8IY18 1101 aa31.4■■■□□ 2.62
TRIM28-204ENST00000594806 NSUN4Q96CB9 384 aaKnown RBP31.4■■■□□ 2.62
TRIM28-204ENST00000594806 FKBP1CQ5VVH2 108 aa31.39■■■□□ 2.62
TRIM28-204ENST00000594806 CST9Q5W186 159 aa31.39■■■□□ 2.62
TRIM28-204ENST00000594806 CDCA5Q96FF9 252 aa31.39■■■□□ 2.62
TRIM28-204ENST00000594806 VEZTQ9HBM0 779 aa31.39■■■□□ 2.62
TRIM28-204ENST00000594806 ECHDC1Q9NTX5 307 aa31.39■■■□□ 2.62
TRIM28-204ENST00000594806 TNNI2P48788 182 aa31.38■■■□□ 2.61
TRIM28-204ENST00000594806 FMR1Q06787 632 aaKnown RBP eCLIP31.38■■■□□ 2.611e-10■■■■□ 20.9
TRIM28-204ENST00000594806 ANKRD45Q5TZF3 282 aa31.38■■■□□ 2.61
TRIM28-204ENST00000594806 DEFB129Q9H1M3 183 aa31.38■■■□□ 2.61
TRIM28-204ENST00000594806 MROH7-TTC4A0A0A0MT08 1334 aa31.36■■■□□ 2.61
TRIM28-204ENST00000594806 AOX1Q06278 1338 aa31.36■■■□□ 2.61
TRIM28-204ENST00000594806 MAP4K4O95819 1239 aaPredicted RBP31.36■■■□□ 2.61
TRIM28-204ENST00000594806 MAST2Q6P0Q8 1798 aa31.35■■■□□ 2.61
TRIM28-204ENST00000594806 TTC41PQ6P2S7 1318 aa31.35■■■□□ 2.61
TRIM28-204ENST00000594806 IGHDP01880 384 aa31.35■■■□□ 2.61
TRIM28-204ENST00000594806 NF2P35240 595 aa31.35■■■□□ 2.61
TRIM28-204ENST00000594806 MAP3K12Q12852 859 aa31.35■■■□□ 2.61
TRIM28-204ENST00000594806 NAA16Q6N069 864 aaPredicted RBP31.35■■■□□ 2.61
TRIM28-204ENST00000594806 HAUS7Q99871 368 aa31.35■■■□□ 2.61
TRIM28-204ENST00000594806 ZNF408Q9H9D4 720 aa31.35■■■□□ 2.61
TRIM28-204ENST00000594806 PIH1D3Q9NQM4 214 aaKnown RBP31.35■■■□□ 2.61
TRIM28-204ENST00000594806 MYO5AQ9Y4I1 1855 aaKnown RBP31.35■■■□□ 2.61
TRIM28-204ENST00000594806 DOCK2Q92608 1830 aa31.34■■■□□ 2.61
TRIM28-204ENST00000594806 GPR75-ASB3A0A0A6YYF3 556 aa31.34■■■□□ 2.61
TRIM28-204ENST00000594806 FKBP1BP68106 108 aa31.34■■■□□ 2.61
TRIM28-204ENST00000594806 FAM83AQ86UY5 434 aa31.34■■■□□ 2.61
TRIM28-204ENST00000594806 RASA3Q14644 834 aa31.33■■■□□ 2.61
TRIM28-204ENST00000594806 CDC42EP5Q6NZY7 148 aa31.33■■■□□ 2.61
TRIM28-204ENST00000594806 C2orf69Q8N8R5 385 aa31.33■■■□□ 2.61
TRIM28-204ENST00000594806 ZNF384Q8TF68 577 aa31.33■■■□□ 2.61
TRIM28-204ENST00000594806 BOLA2Q9H3K6 86 aa31.33■■■□□ 2.61
TRIM28-204ENST00000594806 GBA2Q9HCG7 927 aaPredicted RBP31.33■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms