RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	CRK	P46108	304 aa		11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	HDLBP	Q00341	1268 aa	Known RBP	11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	GORAB	Q5T7V8	394 aa		11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	PRAMEF18	Q5VWM3	479 aa		11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	C2orf69	Q8N8R5	385 aa		11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	GBA2	Q9HCG7	927 aa	Predicted RBP	11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	GPR108	Q9NPR9	543 aa		11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	ARAP2	Q8WZ64	1704 aa		11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	CLRN2	A0PK11	232 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	RASGRF1	Q13972	1273 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	TNNI3K	Q59H18	835 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	SIRT2	Q8IXJ6	389 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	TEKT1	Q969V4	418 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	HHIPL1	Q96JK4	782 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	MRI	Q9BWK5	157 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	FPGT-TNNI3K	V9GXZ4	949 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	MYH13	Q9UKX3	1938 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	MAST3	O60307	1309 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	AOX1	Q06278	1338 aa		11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	WDR33	Q9C0J8	1336 aa	Known RBP	11.33	□□□□□ -0.6
DNMT1-223	ENST00000591239	HMMR	O75330	724 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	LDHB	P07195	334 aa	Known RBP	11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	PRDX5	P30044	214 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	ECE1	P42892	770 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	HUNK	P57058	714 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	CYP4F22	Q6NT55	531 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	CAPNS2	Q96L46	248 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	ZDHHC15	Q96MV8	337 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	DEFB129	Q9H1M3	183 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	TDRD3	Q9H7E2	651 aa	Known RBP	11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	VEZT	Q9HBM0	779 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	EXOC6B	Q9Y2D4	811 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	PDS5A	Q29RF7	1337 aa	Known RBP	11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	SALL1	Q9NSC2	1324 aa		11.32	□□□□□ -0.6
DNMT1-223	ENST00000591239	RRP1	P56182	461 aa	Known RBP	11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	FKBP1B	P68106	108 aa		11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	GRM1	Q13255	1194 aa		11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	SPDYE2	Q495Y8	402 aa		11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	HSP90AB4P	Q58FF6	505 aa		11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	HHIPL2	Q6UWX4	724 aa		11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	ERC1	Q8IUD2	1116 aa		11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	ZGPAT	Q8N5A5	531 aa	Known RBP	11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	ZNF70	Q9UC06	446 aa	Predicted RBP	11.31	□□□□□ -0.6
DNMT1-223	ENST00000591239	ECM29	Q5VYK3	1845 aa		11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	ARID4A	P29374	1257 aa	Predicted RBP	11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	NF2	P35240	595 aa		11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	APOBEC3H	Q6NTF7	200 aa	Known RBP	11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	PI16	Q6UXB8	463 aa		11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	SPATA5	Q8NB90	893 aa		11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	EAF2	Q96CJ1	260 aa	Predicted RBP	11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	DBNDD2	Q9BQY9	259 aa		11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	HMG20B	Q9P0W2	317 aa		11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	ABCF2	Q9UG63	623 aa		11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	PPP2R3B	Q9Y5P8	575 aa		11.3	□□□□□ -0.6
DNMT1-223	ENST00000591239	UQCRFS1P1	P0C7P4	283 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	MCAM	P43121	646 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	TNFAIP1	Q13829	316 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	RASA3	Q14644	834 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	DIXDC1	Q155Q3	683 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	CCDC158	Q5M9N0	1113 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	TTC39A	Q5SRH9	613 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	RGMB	Q6NW40	437 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	MOB2	Q70IA6	237 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	RHPN1	Q8TCX5	695 aa		11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239		U3KPZ7	1027 aa	Predicted RBP	11.29	□□□□□ -0.6
DNMT1-223	ENST00000591239	TCP10L2	B9ZVM9	353 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	UBE2Q2L	H0YL09	131 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	APBB1	O00213	710 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	AOC2	O75106	756 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	HSPA1A	P0DMV8	641 aa	Known RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	HSPA1B	P0DMV9	641 aa	Known RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	MAP2K2	P36507	400 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	ZNF157	P51786	506 aa	Predicted RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	CACNB3	P54284	484 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	TTLL12	Q14166	644 aa	Predicted RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	SUPT20HL1	Q3ZLR7	823 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	DZIP1	Q86YF9	867 aa	Known RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	KIF1BP	Q96EK5	621 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	TLR7	Q9NYK1	1049 aa	Known RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	DBNL	Q9UJU6	430 aa	Known RBP	11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	DAGLA	Q9Y4D2	1042 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	PAPPA2	Q9BXP8	1791 aa		11.28	□□□□□ -0.6
DNMT1-223	ENST00000591239	FAM155A	B1AL88	458 aa	Predicted RBP	11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	RAB11FIP3	O75154	756 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	TNNI2	P48788	182 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	MAP2K1	Q02750	393 aa	Predicted RBP	11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	MECOM	Q03112	1051 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	PRKG1	Q13976	671 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	FKBP1C	Q5VVH2	108 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	TBC1D9	Q6ZT07	1266 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	ERICH6	Q7L0X2	663 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	ARMC9	Q7Z3E5	817 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	AACS	Q86V21	672 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	SLF2	Q8IX21	1173 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms