RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MAP2K2P36507 400 aa29.56■■■□□ 2.32
SHMT1-206ENST00000579558 MAST3O60307 1309 aa29.55■■■□□ 2.32
SHMT1-206ENST00000579558 FOXN1O15353 648 aa29.55■■■□□ 2.32
SHMT1-206ENST00000579558 HDLBPQ00341 1268 aaKnown RBP29.55■■■□□ 2.32
SHMT1-206ENST00000579558 TTLL12Q14166 644 aaPredicted RBP29.55■■■□□ 2.32
SHMT1-206ENST00000579558 CCDC102BQ68D86 513 aa29.55■■■□□ 2.32
SHMT1-206ENST00000579558 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.55■■■□□ 2.32
SHMT1-206ENST00000579558 SEMA3EO15041 775 aa29.54■■■□□ 2.32
SHMT1-206ENST00000579558 ZNF157P51786 506 aaPredicted RBP29.54■■■□□ 2.32
SHMT1-206ENST00000579558 MOB2Q70IA6 237 aa29.54■■■□□ 2.32
SHMT1-206ENST00000579558 TEKT1Q969V4 418 aa29.54■■■□□ 2.32
SHMT1-206ENST00000579558 XAGE2Q96GT9 111 aa29.54■■■□□ 2.32
SHMT1-206ENST00000579558 TDRD3Q9H7E2 651 aaKnown RBP29.54■■■□□ 2.32
SHMT1-206ENST00000579558 DENND2AQ9ULE3 1009 aa29.54■■■□□ 2.32
SHMT1-206ENST00000579558 PPP2R3BQ9Y5P8 575 aa29.54■■■□□ 2.32
SHMT1-206ENST00000579558 NOGQ13253 232 aa29.53■■■□□ 2.32
SHMT1-206ENST00000579558 OS9Q13438 667 aaPredicted RBP29.53■■■□□ 2.32
SHMT1-206ENST00000579558 SPDYE2Q495Y8 402 aa29.53■■■□□ 2.32
SHMT1-206ENST00000579558 CCDC102AQ96A19 550 aa29.53■■■□□ 2.32
SHMT1-206ENST00000579558 NEUROD6Q96NK8 337 aa29.53■■■□□ 2.32
SHMT1-206ENST00000579558 ZNF70Q9UC06 446 aaPredicted RBP29.53■■■□□ 2.32
SHMT1-206ENST00000579558 MVPQ14764 893 aaKnown RBP29.52■■■□□ 2.32
SHMT1-206ENST00000579558 UBE2Q2LH0YL09 131 aa29.51■■■□□ 2.31
SHMT1-206ENST00000579558 SURF6O75683 361 aaKnown RBP29.51■■■□□ 2.31
SHMT1-206ENST00000579558 COG6Q9Y2V7 657 aa29.51■■■□□ 2.31
SHMT1-206ENST00000579558 FAM155AB1AL88 458 aaPredicted RBP29.5■■■□□ 2.31
SHMT1-206ENST00000579558 ZBTB22O15209 634 aa29.5■■■□□ 2.31
SHMT1-206ENST00000579558 TNFAIP1Q13829 316 aa29.5■■■□□ 2.31
SHMT1-206ENST00000579558 CEP85Q6P2H3 762 aa29.5■■■□□ 2.31
SHMT1-206ENST00000579558 BEGAINQ9BUH8 593 aa29.5■■■□□ 2.31
SHMT1-206ENST00000579558 MRIQ9BWK5 157 aa29.5■■■□□ 2.31
SHMT1-206ENST00000579558 SLC10A3P09131 477 aa29.49■■■□□ 2.31
SHMT1-206ENST00000579558 CTCFP49711 727 aaPredicted RBP29.49■■■□□ 2.31
SHMT1-206ENST00000579558 PRKG1Q13976 671 aa29.49■■■□□ 2.31
SHMT1-206ENST00000579558 RASA3Q14644 834 aa29.49■■■□□ 2.31
SHMT1-206ENST00000579558 GORABQ5T7V8 394 aa29.49■■■□□ 2.31
SHMT1-206ENST00000579558 ARMC9Q7Z3E5 817 aa29.49■■■□□ 2.31
SHMT1-206ENST00000579558 ZDHHC15Q96MV8 337 aa29.49■■■□□ 2.31
SHMT1-206ENST00000579558 DDX19BQ9UMR2 479 aa29.49■■■□□ 2.31
SHMT1-206ENST00000579558 SALL1Q9NSC2 1324 aa29.48■■■□□ 2.31
SHMT1-206ENST00000579558 PRDX5P30044 214 aa29.48■■■□□ 2.31
SHMT1-206ENST00000579558 RASGRF1Q13972 1273 aa29.48■■■□□ 2.31
SHMT1-206ENST00000579558 ZIC5Q96T25 663 aa29.48■■■□□ 2.31
SHMT1-206ENST00000579558 LDHBP07195 334 aaKnown RBP29.47■■■□□ 2.31
SHMT1-206ENST00000579558 HHIPL2Q6UWX4 724 aa29.47■■■□□ 2.31
SHMT1-206ENST00000579558 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.47■■■□□ 2.31
SHMT1-206ENST00000579558 NOP58Q9Y2X3 529 aaKnown RBP29.47■■■□□ 2.31
SHMT1-206ENST00000579558 TCP10L2B9ZVM9 353 aa29.46■■■□□ 2.31
SHMT1-206ENST00000579558 SUPT20HL1Q3ZLR7 823 aa29.46■■■□□ 2.31
SHMT1-206ENST00000579558 RASAL3Q86YV0 1011 aa29.46■■■□□ 2.31
SHMT1-206ENST00000579558 PDS5AQ29RF7 1337 aaKnown RBP29.45■■■□□ 2.31
SHMT1-206ENST00000579558 SSC5DA1L4H1 1573 aa29.45■■■□□ 2.31
SHMT1-206ENST00000579558 TNNI2P48788 182 aa29.45■■■□□ 2.31
SHMT1-206ENST00000579558 NBPF12Q5TAG4 269 aaPredicted RBP29.45■■■□□ 2.31
SHMT1-206ENST00000579558 ZGPATQ8N5A5 531 aaKnown RBP29.45■■■□□ 2.31
SHMT1-206ENST00000579558 GPR108Q9NPR9 543 aa29.45■■■□□ 2.31
SHMT1-206ENST00000579558 ANGEL1Q9UNK9 670 aaKnown RBP29.45■■■□□ 2.31
SHMT1-206ENST00000579558 TNNI3KQ59H18 835 aa29.44■■■□□ 2.3
SHMT1-206ENST00000579558 APOBEC3HQ6NTF7 200 aaKnown RBP29.44■■■□□ 2.3
SHMT1-206ENST00000579558 TMOD2Q9NZR1 351 aa29.44■■■□□ 2.3
SHMT1-206ENST00000579558 FPGT-TNNI3KV9GXZ4 949 aa29.44■■■□□ 2.3
SHMT1-206ENST00000579558 PPP1R12BO60237 982 aaPredicted RBP29.43■■■□□ 2.3
SHMT1-206ENST00000579558 HSPA8P11142 646 aaKnown RBP29.43■■■□□ 2.3
SHMT1-206ENST00000579558 KIF23Q02241 960 aaPredicted RBP29.43■■■□□ 2.3
SHMT1-206ENST00000579558 DIXDC1Q155Q3 683 aa29.43■■■□□ 2.3
SHMT1-206ENST00000579558 TNS4Q8IZW8 715 aa29.43■■■□□ 2.3
SHMT1-206ENST00000579558 CHMP4BQ9H444 224 aaKnown RBP29.43■■■□□ 2.3
SHMT1-206ENST00000579558 FZD1Q9UP38 647 aa29.43■■■□□ 2.3
SHMT1-206ENST00000579558 LBX1P52954 281 aa29.42■■■□□ 2.3
SHMT1-206ENST00000579558 CACNB3P54284 484 aa29.42■■■□□ 2.3
SHMT1-206ENST00000579558 PDE3AQ14432 1141 aa29.42■■■□□ 2.3
SHMT1-206ENST00000579558 ZBTB40Q9NUA8 1239 aa29.42■■■□□ 2.3
SHMT1-206ENST00000579558 ABCF2Q9UG63 623 aa29.42■■■□□ 2.3
SHMT1-206ENST00000579558 DAGLAQ9Y4D2 1042 aa29.42■■■□□ 2.3
SHMT1-206ENST00000579558 C20orf194Q5TEA3 1177 aa29.41■■■□□ 2.3
SHMT1-206ENST00000579558 ARID4AP29374 1257 aaPredicted RBP29.4■■■□□ 2.3
SHMT1-206ENST00000579558 LDLRAD1Q5T700 205 aa29.4■■■□□ 2.3
SHMT1-206ENST00000579558 YTHDC1Q96MU7 727 aaKnown RBP29.4■■■□□ 2.3
SHMT1-206ENST00000579558 TMEM39BQ9GZU3 492 aa29.4■■■□□ 2.3
SHMT1-206ENST00000579558 PRDM10Q9NQV6 1147 aa29.4■■■□□ 2.3
SHMT1-206ENST00000579558 HMG20BQ9P0W2 317 aa29.4■■■□□ 2.3
SHMT1-206ENST00000579558 CA12O43570 354 aa29.39■■■□□ 2.3
SHMT1-206ENST00000579558 UQCRFS1P1P0C7P4 283 aa29.39■■■□□ 2.3
SHMT1-206ENST00000579558 MAP3K11Q16584 847 aa29.39■■■□□ 2.3
SHMT1-206ENST00000579558 SPTY2D1Q68D10 685 aaPredicted RBP29.39■■■□□ 2.3
SHMT1-206ENST00000579558 DZIP1Q86YF9 867 aaKnown RBP29.39■■■□□ 2.3
SHMT1-206ENST00000579558 SPATA5Q8NB90 893 aa29.39■■■□□ 2.3
SHMT1-206ENST00000579558 TEPSINQ96N21 525 aa29.39■■■□□ 2.3
SHMT1-206ENST00000579558 DBNDD2Q9BQY9 259 aa29.39■■■□□ 2.3
SHMT1-206ENST00000579558 EXOC6BQ9Y2D4 811 aa29.39■■■□□ 2.3
SHMT1-206ENST00000579558 PI16Q6UXB8 463 aa29.38■■■□□ 2.29
SHMT1-206ENST00000579558 CDAN1Q8IWY9 1227 aa29.38■■■□□ 2.29
SHMT1-206ENST00000579558 RPAP2Q8IXW5 612 aaPredicted RBP29.38■■■□□ 2.29
SHMT1-206ENST00000579558 MYH2Q9UKX2 1941 aa29.37■■■□□ 2.29
SHMT1-206ENST00000579558 TTC39AQ5SRH9 613 aa29.37■■■□□ 2.29
SHMT1-206ENST00000579558 FKBP1CQ5VVH2 108 aa29.37■■■□□ 2.29
SHMT1-206ENST00000579558 ERC1Q8IUD2 1116 aa29.37■■■□□ 2.29
SHMT1-206ENST00000579558 TSKSQ9UJT2 592 aa29.37■■■□□ 2.29
SHMT1-206ENST00000579558 HMMRO75330 724 aa29.36■■■□□ 2.29
SHMT1-206ENST00000579558 MCAMP43121 646 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms