RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SERPINA10Q9UK55 444 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 MYO1BO43795 1136 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 PRDX5P30044 214 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 EPS15P42566 896 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 ZAP70P43403 619 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 RBM5P52756 815 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP3-216ENST00000559873 MAP3K12Q12852 859 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 PI16Q6UXB8 463 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 HAUS7Q99871 368 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 SALL3Q9BXA9 1300 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.24□□□□□ -0.451e-6■■■□□ 15.4
USP3-216ENST00000559873 BOLA2Q9H3K6 86 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 STAP2Q9UGK3 403 aa12.24□□□□□ -0.45
USP3-216ENST00000559873 GOLIM4O00461 696 aa12.23□□□□□ -0.45
USP3-216ENST00000559873 IDH1O75874 414 aaKnown RBP12.23□□□□□ -0.45
USP3-216ENST00000559873 CYP2E1P05181 493 aaPredicted RBP12.23□□□□□ -0.45
USP3-216ENST00000559873 LDHCP07864 332 aa12.23□□□□□ -0.45
USP3-216ENST00000559873 PDE1AP54750 535 aa12.23□□□□□ -0.45
USP3-216ENST00000559873 DLGAP5Q15398 846 aa12.23□□□□□ -0.45
USP3-216ENST00000559873 EAPPQ56P03 285 aaPredicted RBP12.23□□□□□ -0.45
USP3-216ENST00000559873 ZSCAN25Q6NSZ9 544 aa12.23□□□□□ -0.45
USP3-216ENST00000559873 MTMR14Q8NCE2 650 aa12.23□□□□□ -0.45
USP3-216ENST00000559873 OTUD7AQ8TE49 926 aaPredicted RBP12.23□□□□□ -0.45
USP3-216ENST00000559873 NOL10Q9BSC4 688 aaKnown RBP12.23□□□□□ -0.45
USP3-216ENST00000559873 MRIQ9BWK5 157 aa12.23□□□□□ -0.45
USP3-216ENST00000559873 AKAP11Q9UKA4 1901 aa12.23□□□□□ -0.45
USP3-216ENST00000559873 CRKP46108 304 aa12.22□□□□□ -0.45
USP3-216ENST00000559873 CFAP100Q494V2 611 aa12.22□□□□□ -0.45
USP3-216ENST00000559873 TBC1D10BQ4KMP7 808 aaPredicted RBP12.22□□□□□ -0.45
USP3-216ENST00000559873 TSHZ3Q63HK5 1081 aa12.22□□□□□ -0.45
USP3-216ENST00000559873 NAA16Q6N069 864 aaPredicted RBP12.22□□□□□ -0.45
USP3-216ENST00000559873 HHIPL2Q6UWX4 724 aa12.22□□□□□ -0.45
USP3-216ENST00000559873 LDHDQ86WU2 507 aa12.22□□□□□ -0.45
USP3-216ENST00000559873 PI4K2BQ8TCG2 481 aa12.22□□□□□ -0.45
USP3-216ENST00000559873 ZC3H15Q8WU90 426 aaKnown RBP12.22□□□□□ -0.45
USP3-216ENST00000559873 OSBPL3Q9H4L5 887 aa12.22□□□□□ -0.45
USP3-216ENST00000559873 SPDYE2BA6NHP3 402 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 POTECB2RU33 542 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 SPDYE6P0CI01 402 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 RBM26Q5T8P6 1007 aaKnown RBP12.21□□□□□ -0.45
USP3-216ENST00000559873 TBC1D9Q6ZT07 1266 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 SAMD7Q7Z3H4 446 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 CERS3Q8IU89 383 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 CNTROBQ8N137 903 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 TRPM4Q8TD43 1214 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 NSUN4Q96CB9 384 aaKnown RBP12.21□□□□□ -0.45
USP3-216ENST00000559873 PIH1D3Q9NQM4 214 aaKnown RBP12.21□□□□□ -0.45
USP3-216ENST00000559873 TMOD2Q9NZR1 351 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 CLEC11AQ9Y240 323 aa12.21□□□□□ -0.45
USP3-216ENST00000559873 DOCK2Q92608 1830 aa12.21□□□□□ -0.46
USP3-216ENST00000559873 MROH7-TTC4A0A0A0MT08 1334 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 GAKO14976 1311 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 SHTN1A0MZ66 631 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 KIF3CO14782 793 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 BAG3O95817 575 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 ZFYP08048 801 aaPredicted RBP12.2□□□□□ -0.46
USP3-216ENST00000559873 MECOMQ03112 1051 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 DIXDC1Q155Q3 683 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 APOBEC3FQ8IUX4 373 aaKnown RBP12.2□□□□□ -0.46
USP3-216ENST00000559873 PLEKHM2Q8IWE5 1019 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 EVI5LQ96CN4 794 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 ZDHHC15Q96MV8 337 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 FSD1Q9BTV5 496 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 NDUFB9Q9Y6M9 179 aa12.2□□□□□ -0.46
USP3-216ENST00000559873 RFX7Q2KHR2 1363 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 PITPNM2Q9BZ72 1349 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 TRIM6-TRIM34B2RNG4 842 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 WNT10BO00744 389 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 TOMM70O94826 608 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 MAP4K4O95819 1239 aaPredicted RBP12.19□□□□□ -0.46
USP3-216ENST00000559873 PLCG2P16885 1265 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 TNFAIP1Q13829 316 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 GRIK5Q16478 980 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 TICAM2Q86XR7 235 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 MAGEB6Q8N7X4 407 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 KBTBD3Q8NAB2 608 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 SMC1BQ8NDV3 1235 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 DCPSQ96C86 337 aaKnown RBP12.19□□□□□ -0.46
USP3-216ENST00000559873 ANTXR1Q9H6X2 564 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 DAGLAQ9Y4D2 1042 aa12.19□□□□□ -0.46
USP3-216ENST00000559873 ADAMTSL1Q8N6G6 1762 aa12.18□□□□□ -0.46
USP3-216ENST00000559873 PDE6AP16499 860 aa12.18□□□□□ -0.46
USP3-216ENST00000559873 PDE4AP27815 886 aa12.18□□□□□ -0.46
USP3-216ENST00000559873 UBE3CQ15386 1083 aa12.18□□□□□ -0.46
USP3-216ENST00000559873 SLC9C2Q5TAH2 1124 aa12.18□□□□□ -0.46
USP3-216ENST00000559873 CHADLQ6NUI6 762 aa12.18□□□□□ -0.46
USP3-216ENST00000559873 SULF1Q8IWU6 871 aa12.18□□□□□ -0.46
USP3-216ENST00000559873 RBM46Q8TBY0 533 aaKnown RBP12.18□□□□□ -0.46
USP3-216ENST00000559873 FAM163AQ96GL9 167 aaPredicted RBP12.18□□□□□ -0.46
USP3-216ENST00000559873 ZBED3Q96IU2 234 aaPredicted RBP12.18□□□□□ -0.46
USP3-216ENST00000559873 GGA3Q9NZ52 723 aa12.18□□□□□ -0.46
USP3-216ENST00000559873 ECM29Q5VYK3 1845 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 EGFRP00533 1210 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 CYP7A1P22680 504 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 BTDP43251 543 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 TNNI2P48788 182 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 NBPF9Q3BBW0 867 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 SPDYE2Q495Y8 402 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 TTC22Q5TAA0 569 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 ANGEL2Q5VTE6 544 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms