RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TRMT44Q8IYL2 757 aaKnown RBP14.31□□□□□ -0.12
LDLR-205ENST00000557933 LINC00301Q8NCQ3 95 aa14.31□□□□□ -0.12
LDLR-205ENST00000557933 ERO1AQ96HE7 468 aa14.31□□□□□ -0.12
LDLR-205ENST00000557933 HAUS7Q99871 368 aa14.31□□□□□ -0.12
LDLR-205ENST00000557933 SPTLC2O15270 562 aa14.31□□□□□ -0.12
LDLR-205ENST00000557933 CMTR1Q8N1G2 835 aaKnown RBP14.31□□□□□ -0.12
LDLR-205ENST00000557933 COL5A2P05997 1499 aaPredicted RBP14.31□□□□□ -0.12
LDLR-205ENST00000557933 A0A0U1RQJ8 604 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 FANCCQ00597 558 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 KARSQ15046 597 aaKnown RBP14.3□□□□□ -0.12
LDLR-205ENST00000557933 SYNE3Q6ZMZ3 975 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 MICU3Q86XE3 530 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 GRAMD1CQ8IYS0 662 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 TTC5Q8N0Z6 440 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 ATRIPQ8WXE1 791 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 PRC1O43663 620 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 CDC25BP30305 580 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 ADKP55263 362 aaKnown RBP14.3□□□□□ -0.12
LDLR-205ENST00000557933 TEX35Q5T0J7 233 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 SYNE4Q8N205 404 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 RAPGEF4Q8WZA2 1011 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 NAT10Q9H0A0 1025 aaKnown RBP14.3□□□□□ -0.12
LDLR-205ENST00000557933 COPRSQ9NQ92 184 aa14.3□□□□□ -0.12
LDLR-205ENST00000557933 A0A1B0GUL7 405 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 A1BGP04217 495 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 APPP05067 770 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 EXOSC10Q01780 885 aaKnown RBP14.29□□□□□ -0.12
LDLR-205ENST00000557933 TSGA10IPQ3SY00 556 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 NAA16Q6N069 864 aaPredicted RBP14.29□□□□□ -0.12
LDLR-205ENST00000557933 NOL10Q9BSC4 688 aaKnown RBP14.29□□□□□ -0.12
LDLR-205ENST00000557933 CDC27P30260 824 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 UBASH3AP57075 661 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 MNS1Q8NEH6 495 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 PUS7LQ9H0K6 701 aaKnown RBP14.29□□□□□ -0.12
LDLR-205ENST00000557933 FANCLQ9NW38 375 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.29□□□□□ -0.129e-9■■□□□ 11.4
LDLR-205ENST00000557933 PALLDQ8WX93 1383 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 KDM3BQ7LBC6 1761 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 NEDD4P46934 1319 aa14.29□□□□□ -0.12
LDLR-205ENST00000557933 CTAGE5O15320 804 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 ST5P78524 1137 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 NCAPHQ15003 741 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 MYSM1Q5VVJ2 828 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 CPLX3Q8WVH0 158 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 CHMP4CQ96CF2 233 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 AMOTQ4VCS5 1084 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 ATG9AQ7Z3C6 839 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 CREBRFQ8IUR6 639 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 UBXN4Q92575 508 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.28□□□□□ -0.12
LDLR-205ENST00000557933 FHOD1Q9Y613 1164 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.28□□□□□ -0.12
LDLR-205ENST00000557933 FGAP02671 866 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 PNMA6AP0CW24 399 aaPredicted RBP14.28□□□□□ -0.12
LDLR-205ENST00000557933 GRIN1Q05586 938 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 ADALQ6DHV7 355 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 WDR24Q96S15 920 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 CACNA1FO60840 1977 aa14.28□□□□□ -0.12
LDLR-205ENST00000557933 SCN11AQ9UI33 1791 aa14.27□□□□□ -0.12
LDLR-205ENST00000557933 SHANK3Q9BYB0 1731 aa14.27□□□□□ -0.12
LDLR-205ENST00000557933 MTF1Q14872 753 aa14.27□□□□□ -0.12
LDLR-205ENST00000557933 SKIDA1Q1XH10 827 aa14.27□□□□□ -0.12
LDLR-205ENST00000557933 MRC1P22897 1456 aa14.27□□□□□ -0.13
LDLR-205ENST00000557933 CASP1P29466 404 aa14.27□□□□□ -0.13
LDLR-205ENST00000557933 PLA2G4AP47712 749 aa14.27□□□□□ -0.13
LDLR-205ENST00000557933 GABPB1Q06547 395 aaPredicted RBP14.27□□□□□ -0.13
LDLR-205ENST00000557933 PDE4BQ07343 736 aa14.27□□□□□ -0.13
LDLR-205ENST00000557933 PLCD3Q8N3E9 789 aa14.27□□□□□ -0.13
LDLR-205ENST00000557933 HSD3B7Q9H2F3 369 aa14.27□□□□□ -0.13
LDLR-205ENST00000557933 SLC52A2Q9HAB3 445 aa14.27□□□□□ -0.13
LDLR-205ENST00000557933 HDAC5Q9UQL6 1122 aa14.27□□□□□ -0.13
LDLR-205ENST00000557933 SNAP23O00161 211 aa14.26□□□□□ -0.13
LDLR-205ENST00000557933 FOXP2O15409 715 aa14.26□□□□□ -0.13
LDLR-205ENST00000557933 GTF2E1P29083 439 aaPredicted RBP14.26□□□□□ -0.13
LDLR-205ENST00000557933 SYKP43405 635 aa14.26□□□□□ -0.13
LDLR-205ENST00000557933 GNG11P61952 73 aa14.26□□□□□ -0.13
LDLR-205ENST00000557933 IRX5P78411 483 aaPredicted RBP14.26□□□□□ -0.13
LDLR-205ENST00000557933 HPS5Q9UPZ3 1129 aa14.26□□□□□ -0.13
LDLR-205ENST00000557933 UTYO14607 1347 aa14.26□□□□□ -0.13
LDLR-205ENST00000557933 NEMFO60524 1076 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 SASH3O75995 380 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 ZAP70P43403 619 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 ANTXR2P58335 489 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 ZMYM1Q5SVZ6 1142 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 ANO1Q5XXA6 986 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 AEBP2Q6ZN18 517 aaPredicted RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 TOGARAM2Q6ZUX3 1019 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 FBXO18Q8NFZ0 1043 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 ZKSCAN3Q9BRR0 538 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 TMEM51Q9NW97 253 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 SALL1Q9NSC2 1324 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 HNRNPH2P55795 449 aaKnown RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 EVCP57679 992 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 GSDMDP57764 484 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 RALYLQ86SE5 291 aaKnown RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 FOXP4Q8IVH2 680 aaPredicted RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 ALDH8A1Q9H2A2 487 aaPredicted RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 TOMM22Q9NS69 142 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 RTEL1Q9NZ71 1219 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 RNF113AO15541 343 aaKnown RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms