RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ZFYP08048 801 aaPredicted RBP20.29■□□□□ 0.84
SYNE3-202ENST00000553340 NCOA7Q8NI08 942 aa20.29■□□□□ 0.84
SYNE3-202ENST00000553340 GJB4Q9NTQ9 266 aa20.29■□□□□ 0.84
SYNE3-202ENST00000553340 CCDC66A2RUB6 948 aa20.29■□□□□ 0.84
SYNE3-202ENST00000553340 CIAO1O76071 339 aa20.29■□□□□ 0.84
SYNE3-202ENST00000553340 SLC39A14Q15043 492 aa20.29■□□□□ 0.84
SYNE3-202ENST00000553340 RALYLQ86SE5 291 aaKnown RBP20.29■□□□□ 0.84
SYNE3-202ENST00000553340 DNAI1Q9UI46 699 aa20.29■□□□□ 0.84
SYNE3-202ENST00000553340 FGAP02671 866 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 SYKP43405 635 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 ARHGAP29Q52LW3 1261 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 ISM2Q6H9L7 571 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 CREBRFQ8IUR6 639 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 LRRN4CLQ8ND94 238 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 ZNF594Q96JF6 807 aaPredicted RBP20.28■□□□□ 0.84
SYNE3-202ENST00000553340 TUBE1Q9UJT0 475 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 KIF1AQ12756 1690 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 MEGF6O75095 1541 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 ATP1A3P13637 1013 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 CLCN6P51797 869 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 UBASH3AP57075 661 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 CABP4P57796 275 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 CCDC158Q5M9N0 1113 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 RGS22Q8NE09 1264 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 ATG3Q9NT62 314 aa20.28■□□□□ 0.84
SYNE3-202ENST00000553340 WDHD1O75717 1129 aaPredicted RBP20.27■□□□□ 0.84
SYNE3-202ENST00000553340 SERPINC1P01008 464 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 MARCKSP29966 332 aaPredicted RBP20.27■□□□□ 0.84
SYNE3-202ENST00000553340 CEP126Q9P2H0 1117 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 MROH7-TTC4A0A0A0MT08 1334 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 FOXP2O15409 715 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 MYL5Q02045 173 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 GORABQ5T7V8 394 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 RAB11FIP4Q86YS3 637 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 UBXN4Q92575 508 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 HSD3B7Q9H2F3 369 aa20.27■□□□□ 0.84
SYNE3-202ENST00000553340 ARGLU1Q9NWB6 273 aaPredicted RBP20.27■□□□□ 0.84
SYNE3-202ENST00000553340 TRPM3Q9HCF6 1732 aaPredicted RBP20.27■□□□□ 0.83
SYNE3-202ENST00000553340 TTC39AQ5SRH9 613 aa20.26■□□□□ 0.83
SYNE3-202ENST00000553340 JMYQ8N9B5 988 aa20.26■□□□□ 0.83
SYNE3-202ENST00000553340 SRRTQ9BXP5 876 aaKnown RBP20.26■□□□□ 0.83
SYNE3-202ENST00000553340 CYP27B1O15528 508 aa20.26■□□□□ 0.83
SYNE3-202ENST00000553340 ANTXR2P58335 489 aa20.26■□□□□ 0.83
SYNE3-202ENST00000553340 FHOD1Q9Y613 1164 aa20.26■□□□□ 0.83
SYNE3-202ENST00000553340 NWD2Q9ULI1 1742 aa20.26■□□□□ 0.83
SYNE3-202ENST00000553340 WDR19Q8NEZ3 1342 aa20.26■□□□□ 0.83
SYNE3-202ENST00000553340 ZNF213O14771 459 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 CFAP100Q494V2 611 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 MNS1Q8NEH6 495 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 ST7Q9NRC1 585 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 NBPF26B4DH59 902 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 PPP6R2O75170 966 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 CSB-PGBD3P0DP91 1061 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 NBPF14Q5TI25 921 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 NBPF10Q6P3W6 841 aaKnown RBP20.25■□□□□ 0.83
SYNE3-202ENST00000553340 NBPF15Q8N660 670 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 NOL10Q9BSC4 688 aaKnown RBP20.25■□□□□ 0.83
SYNE3-202ENST00000553340 PUS3Q9BZE2 481 aaKnown RBP20.25■□□□□ 0.83
SYNE3-202ENST00000553340 TMX1Q9H3N1 280 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 HPSEQ9Y251 543 aa20.25■□□□□ 0.83
SYNE3-202ENST00000553340 CCDC191Q8NCU4 936 aa20.24■□□□□ 0.83
SYNE3-202ENST00000553340 APPBP2Q92624 585 aa20.24■□□□□ 0.83
SYNE3-202ENST00000553340 MYO1BO43795 1136 aa20.24■□□□□ 0.83
SYNE3-202ENST00000553340 TRIM65Q6PJ69 517 aa20.24■□□□□ 0.83
SYNE3-202ENST00000553340 TTLL7Q6ZT98 887 aa20.24■□□□□ 0.83
SYNE3-202ENST00000553340 DPF2Q92785 391 aa20.24■□□□□ 0.83
SYNE3-202ENST00000553340 LAMB4A4D0S4 1761 aa20.24■□□□□ 0.83
SYNE3-202ENST00000553340 ZSCAN12O43309 604 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 PNMA6AP0CW24 399 aaPredicted RBP20.23■□□□□ 0.83
SYNE3-202ENST00000553340 TMCO3Q6UWJ1 677 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 OLFM4Q6UX06 510 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 FCHSD1Q86WN1 690 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 VSTM4Q8IW00 320 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 ALG1Q9BT22 464 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 UTP14AQ9BVJ6 771 aaKnown RBP20.23■□□□□ 0.83
SYNE3-202ENST00000553340 AKAP2Q9Y2D5 859 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 TOP1P11387 765 aaKnown RBP20.23■□□□□ 0.83
SYNE3-202ENST00000553340 VPS37DQ86XT2 251 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 URI1O94763 535 aaPredicted RBP20.23■□□□□ 0.83
SYNE3-202ENST00000553340 GNL2Q13823 731 aaKnown RBP20.23■□□□□ 0.83
SYNE3-202ENST00000553340 SHC4Q6S5L8 630 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 XAGE2Q96GT9 111 aa20.23■□□□□ 0.83
SYNE3-202ENST00000553340 CDKL5O76039 1030 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 TPM1P09493 284 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 TRDNQ13061 729 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 PNOCQ13519 176 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 PUS7LQ9H0K6 701 aaKnown RBP20.22■□□□□ 0.83
SYNE3-202ENST00000553340 ZMYM6O95789 1325 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 CPDO75976 1380 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 FAM237AA0A1B0GTK4 181 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 CCDC57Q2TAC2 916 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 REXO1L1PQ8IX06 675 aa20.22■□□□□ 0.83
SYNE3-202ENST00000553340 PLEKHG2Q9H7P9 1386 aa20.21■□□□□ 0.83
SYNE3-202ENST00000553340 EFCAB8A8MWE9 144 aa20.21■□□□□ 0.83
SYNE3-202ENST00000553340 ADORA1P30542 326 aa20.21■□□□□ 0.83
SYNE3-202ENST00000553340 CPLX2Q6PUV4 134 aaKnown RBP20.21■□□□□ 0.83
SYNE3-202ENST00000553340 ANGEL1Q9UNK9 670 aaKnown RBP20.21■□□□□ 0.83
SYNE3-202ENST00000553340 GPAA1O43292 621 aa20.21■□□□□ 0.83
SYNE3-202ENST00000553340 ZRANB2O95218 330 aaKnown RBP eCLIP20.21■□□□□ 0.83
SYNE3-202ENST00000553340 METAP2P50579 478 aaKnown RBP eCLIP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms