RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ADAM11	O75078	769 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	GSTT1	P30711	240 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	FCGRT	P55899	365 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	POU4F3	Q15319	338 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	NKAPL	Q5M9Q1	402 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	KIAA1211	Q6ZU35	1233 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	SSBP4	Q9BWG4	385 aa	Predicted RBP	5	□□□□□ -1.61
CD44-238	ENST00000534296	BCO2	Q9BYV7	579 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	RAD18	Q9NS91	495 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	GPN3	Q9UHW5	284 aa	Predicted RBP	5	□□□□□ -1.61
CD44-238	ENST00000534296	HIF3A	Q9Y2N7	669 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	SAMM50	Q9Y512	469 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	LOC100289279	A0A1B0GTE1	492 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	LDHB	P07195	334 aa	Known RBP	4.99	□□□□□ -1.61
CD44-238	ENST00000534296	ERCC3	P19447	782 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	PDE3A	Q14432	1141 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	CCDC27	Q2M243	656 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	EAPP	Q56P03	285 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-238	ENST00000534296	EXOSC6	Q5RKV6	272 aa	Known RBP	4.99	□□□□□ -1.61
CD44-238	ENST00000534296	PRR23C	Q6ZRP0	262 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	SLC51A	Q86UW1	340 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	HOMEZ	Q8IX15	550 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	C12orf50	Q8NA57	414 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-238	ENST00000534296	CEP44	Q9C0F1	390 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	STOML1	Q9UBI4	398 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	PPM1H	Q9ULR3	514 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	AKAP2	Q9Y2D5	859 aa		4.99	□□□□□ -1.61
CD44-238	ENST00000534296	ANKRD33B	A6NCL7	494 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	MAOB	P27338	520 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	ZNF423	Q2M1K9	1284 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-238	ENST00000534296	SMG8	Q8ND04	991 aa	Known RBP	4.98	□□□□□ -1.61
CD44-238	ENST00000534296	GIMAP7	Q8NHV1	300 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	MYRFL	Q96LU7	910 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	KCNF1	Q9H3M0	494 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	SUGCT	Q9HAC7	445 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	TMEM39A	Q9NV64	488 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	RAX	Q9Y2V3	346 aa		4.98	□□□□□ -1.61
CD44-238	ENST00000534296	TM4SF5	O14894	197 aa		4.97	□□□□□ -1.61
CD44-238	ENST00000534296	PRPF40A	O75400	957 aa	Known RBP	4.97	□□□□□ -1.61
CD44-238	ENST00000534296	P4HB	P07237	508 aa	Known RBP	4.97	□□□□□ -1.61
CD44-238	ENST00000534296	RXRB	P28702	533 aa		4.97	□□□□□ -1.61
CD44-238	ENST00000534296	USP11	P51784	963 aa		4.97	□□□□□ -1.61
CD44-238	ENST00000534296	NXPE4	Q6UWF7	544 aa		4.97	□□□□□ -1.61
CD44-238	ENST00000534296	PI16	Q6UXB8	463 aa		4.97	□□□□□ -1.61
CD44-238	ENST00000534296	FAM46A	Q96IP4	442 aa	Known RBP	4.97	□□□□□ -1.61
CD44-238	ENST00000534296	EMILIN2	Q9BXX0	1053 aa		4.97	□□□□□ -1.61
CD44-238	ENST00000534296	TMPRSS13	Q9BYE2	586 aa		4.97	□□□□□ -1.61
CD44-238	ENST00000534296	GZF1	Q9H116	711 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-238	ENST00000534296	FAM8A1	Q9UBU6	413 aa		4.97	□□□□□ -1.61
CD44-238	ENST00000534296	BMP3	P12645	472 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	EIF4B	P23588	611 aa	Known RBP	4.96	□□□□□ -1.62
CD44-238	ENST00000534296	GNA15	P30679	374 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	PREP	P48147	710 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	PRSS36	Q5K4E3	855 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	XP32	Q5T750	250 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	HGSNAT	Q68CP4	663 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	GLIS3	Q8NEA6	775 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	UBL7	Q96S82	380 aa	Predicted RBP	4.96	□□□□□ -1.62
CD44-238	ENST00000534296	C12orf49	Q9H741	205 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	AP4E1	Q9UPM8	1137 aa		4.96	□□□□□ -1.62
CD44-238	ENST00000534296	SCO2	A0A1W2PP80	73 aa		4.95	□□□□□ -1.62
CD44-238	ENST00000534296	SLFN14	P0C7P3	912 aa		4.95	□□□□□ -1.62
CD44-238	ENST00000534296	FST	P19883	344 aa		4.95	□□□□□ -1.62
CD44-238	ENST00000534296	XPC	Q01831	940 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-238	ENST00000534296	ZMYM1	Q5SVZ6	1142 aa		4.95	□□□□□ -1.62
CD44-238	ENST00000534296	DIEXF	Q68CQ4	756 aa	Known RBP	4.95	□□□□□ -1.62
CD44-238	ENST00000534296	CLEC10A	Q8IUN9	316 aa		4.95	□□□□□ -1.62
CD44-238	ENST00000534296	FAM20C	Q8IXL6	584 aa		4.95	□□□□□ -1.62
CD44-238	ENST00000534296	TIAF1	O95411	115 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	GSTP1	P09211	210 aa	Known RBP	4.94	□□□□□ -1.62
CD44-238	ENST00000534296	ADH5	P11766	374 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	LMNB1	P20700	586 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	MAP4	P27816	1152 aa	Known RBP	4.94	□□□□□ -1.62
CD44-238	ENST00000534296	ZNF157	P51786	506 aa	Predicted RBP	4.94	□□□□□ -1.62
CD44-238	ENST00000534296	SOX4	Q06945	474 aa	Predicted RBP	4.94	□□□□□ -1.62
CD44-238	ENST00000534296	AKAP4	Q5JQC9	854 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	PAOX	Q6QHF9	649 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	BEND4	Q6ZU67	534 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	SULF2	Q8IWU5	870 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	ARMC10	Q8N2F6	343 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	ACSBG1	Q96GR2	724 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	TRIM56	Q9BRZ2	755 aa	Known RBP	4.94	□□□□□ -1.62
CD44-238	ENST00000534296	NRSN2	Q9GZP1	204 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	PIDD1	Q9HB75	910 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	MRS2	Q9HD23	443 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	KRT82	Q9NSB4	513 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	TTF2	Q9UNY4	1162 aa	Known RBP	4.94	□□□□□ -1.62
CD44-238	ENST00000534296	SYNGAP1	Q96PV0	1343 aa		4.94	□□□□□ -1.62
CD44-238	ENST00000534296	IGLV1-40	P01703	118 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	USP17L7	P0C7H9	530 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	NME2	P22392	152 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	FAAP100	Q0VG06	881 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	NFIA	Q12857	509 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	PSMD2	Q13200	908 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	MAP7	Q14244	749 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	LRRC14	Q15048	493 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	TPTE2	Q6XPS3	522 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	DYM	Q7RTS9	669 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	KCNB2	Q92953	911 aa		4.93	□□□□□ -1.62

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