RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 MYH2Q9UKX2 1941 aa17.68■□□□□ 0.42
CPSF1-206ENST00000531480 POLR2AP24928 1970 aaKnown RBP17.68■□□□□ 0.42
CPSF1-206ENST00000531480 CYP2E1P05181 493 aaPredicted RBP17.68■□□□□ 0.42
CPSF1-206ENST00000531480 TTF2Q9UNY4 1162 aaKnown RBP17.68■□□□□ 0.42
CPSF1-206ENST00000531480 TTC41PQ6P2S7 1318 aa17.68■□□□□ 0.42
CPSF1-206ENST00000531480 WNT10BO00744 389 aa17.67■□□□□ 0.42
CPSF1-206ENST00000531480 ZAP70P43403 619 aa17.67■□□□□ 0.42
CPSF1-206ENST00000531480 FSTL1Q12841 308 aa17.67■□□□□ 0.42
CPSF1-206ENST00000531480 TBC1D10BQ4KMP7 808 aaPredicted RBP17.67■□□□□ 0.42
CPSF1-206ENST00000531480 HHIPL2Q6UWX4 724 aa17.67■□□□□ 0.42
CPSF1-206ENST00000531480 SMC1BQ8NDV3 1235 aa17.67■□□□□ 0.42
CPSF1-206ENST00000531480 FAM163AQ96GL9 167 aaPredicted RBP17.67■□□□□ 0.42
CPSF1-206ENST00000531480 ECHDC1Q9NTX5 307 aa17.67■□□□□ 0.42
CPSF1-206ENST00000531480 STAP2Q9UGK3 403 aa17.67■□□□□ 0.42
CPSF1-206ENST00000531480 SPDYE2BA6NHP3 402 aa17.66■□□□□ 0.42
CPSF1-206ENST00000531480 LDHBP07195 334 aaKnown RBP17.66■□□□□ 0.42
CPSF1-206ENST00000531480 SPDYE6P0CI01 402 aa17.66■□□□□ 0.42
CPSF1-206ENST00000531480 SPTY2D1Q68D10 685 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-206ENST00000531480 CHADLQ6NUI6 762 aa17.66■□□□□ 0.42
CPSF1-206ENST00000531480 CHD1LQ86WJ1 897 aa17.66■□□□□ 0.42
CPSF1-206ENST00000531480 ZNF384Q8TF68 577 aa17.66■□□□□ 0.42
CPSF1-206ENST00000531480 ZDHHC15Q96MV8 337 aa17.66■□□□□ 0.42
CPSF1-206ENST00000531480 HAUS7Q99871 368 aa17.66■□□□□ 0.42
CPSF1-206ENST00000531480 PITPNM2Q9BZ72 1349 aa17.66■□□□□ 0.42
CPSF1-206ENST00000531480 F8W031 263 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-206ENST00000531480 CRKP46108 304 aa17.65■□□□□ 0.42
CPSF1-206ENST00000531480 CFAP100Q494V2 611 aa17.65■□□□□ 0.42
CPSF1-206ENST00000531480 EAPPQ56P03 285 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-206ENST00000531480 TMED8Q6PL24 325 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-206ENST00000531480 TBC1D9Q6ZT07 1266 aa17.65■□□□□ 0.42
CPSF1-206ENST00000531480 PI4K2BQ8TCG2 481 aa17.65■□□□□ 0.42
CPSF1-206ENST00000531480 OTUD7AQ8TE49 926 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-206ENST00000531480 SNRKQ9NRH2 765 aa17.65■□□□□ 0.42
CPSF1-206ENST00000531480 GAKO14976 1311 aa17.65■□□□□ 0.42
CPSF1-206ENST00000531480 MYH7P12883 1935 aa17.64■□□□□ 0.42
CPSF1-206ENST00000531480 MX1P20591 662 aa17.64■□□□□ 0.41
CPSF1-206ENST00000531480 DLGAP5Q15398 846 aa17.64■□□□□ 0.41
CPSF1-206ENST00000531480 NBPF9Q3BBW0 867 aa17.64■□□□□ 0.41
CPSF1-206ENST00000531480 ERICH6Q7L0X2 663 aa17.64■□□□□ 0.41
CPSF1-206ENST00000531480 TEKT1Q969V4 418 aa17.64■□□□□ 0.41
CPSF1-206ENST00000531480 NSUN4Q96CB9 384 aaKnown RBP17.64■□□□□ 0.41
CPSF1-206ENST00000531480 GPATCH3Q96I76 525 aa17.64■□□□□ 0.41
CPSF1-206ENST00000531480 PRMT6Q96LA8 375 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-206ENST00000531480 PIH1D3Q9NQM4 214 aaKnown RBP17.64■□□□□ 0.41
CPSF1-206ENST00000531480 ABCF2Q9UG63 623 aa17.64■□□□□ 0.41
CPSF1-206ENST00000531480 ITGBL1O95965 494 aaPredicted RBP17.63■□□□□ 0.41
CPSF1-206ENST00000531480 MECOMQ03112 1051 aa17.63■□□□□ 0.41
CPSF1-206ENST00000531480 TTF1Q15361 905 aaPredicted RBP17.63■□□□□ 0.41
CPSF1-206ENST00000531480 RBM26Q5T8P6 1007 aaKnown RBP17.63■□□□□ 0.41
CPSF1-206ENST00000531480 APOBEC3HQ6NTF7 200 aaKnown RBP17.63■□□□□ 0.41
CPSF1-206ENST00000531480 LNPKQ9C0E8 428 aa17.63■□□□□ 0.41
CPSF1-206ENST00000531480 OSBPL3Q9H4L5 887 aa17.63■□□□□ 0.41
CPSF1-206ENST00000531480 ANTXR1Q9H6X2 564 aa17.63■□□□□ 0.41
CPSF1-206ENST00000531480 PCDHAC2Q9Y5I4 1007 aa17.63■□□□□ 0.41
CPSF1-206ENST00000531480 NDUFB9Q9Y6M9 179 aa17.63■□□□□ 0.41
CPSF1-206ENST00000531480 AOX1Q06278 1338 aa17.63■□□□□ 0.41
CPSF1-206ENST00000531480 PDE1AP54750 535 aa17.62■□□□□ 0.41
CPSF1-206ENST00000531480 B4GALNT3Q6L9W6 998 aa17.62■□□□□ 0.41
CPSF1-206ENST00000531480 BOLA2Q9H3K6 86 aa17.62■□□□□ 0.41
CPSF1-206ENST00000531480 ZBTB47Q9UFB7 747 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-206ENST00000531480 DAGLAQ9Y4D2 1042 aa17.62■□□□□ 0.41
CPSF1-206ENST00000531480 ASTN2O75129 1339 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-206ENST00000531480 ERC2O15083 957 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 GLRX3O76003 335 aaKnown RBP17.61■□□□□ 0.41
CPSF1-206ENST00000531480 DIXDC1Q155Q3 683 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 CENPQQ7L2Z9 268 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-206ENST00000531480 DZIP1Q86YF9 867 aaKnown RBP17.61■□□□□ 0.41
CPSF1-206ENST00000531480 SLF2Q8IX21 1173 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 PAG1Q9NWQ8 432 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 GGA3Q9NZ52 723 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 LRP2BPQ9P2M1 347 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 GTF3C3Q9Y5Q9 886 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 PASKQ96RG2 1323 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 TRPM7Q96QT4 1865 aa17.61■□□□□ 0.41
CPSF1-206ENST00000531480 SPDYE2Q495Y8 402 aa17.6■□□□□ 0.41
CPSF1-206ENST00000531480 ANGEL2Q5VTE6 544 aaKnown RBP17.6■□□□□ 0.41
CPSF1-206ENST00000531480 TSHZ3Q63HK5 1081 aa17.6■□□□□ 0.41
CPSF1-206ENST00000531480 MAP1SQ66K74 1059 aaPredicted RBP17.6■□□□□ 0.41
CPSF1-206ENST00000531480 PLEKHM2Q8IWE5 1019 aa17.6■□□□□ 0.41
CPSF1-206ENST00000531480 CNTROBQ8N137 903 aa17.6■□□□□ 0.41
CPSF1-206ENST00000531480 MROH7-TTC4A0A0A0MT08 1334 aa17.6■□□□□ 0.41
CPSF1-206ENST00000531480 RFX7Q2KHR2 1363 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 GPR75-ASB3A0A0A6YYF3 556 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 GSTO1P78417 241 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 FKBP1CQ5VVH2 108 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 CDC37L1Q7L3B6 337 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 DNAJC5GQ8N7S2 189 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 DNAJC2Q99543 621 aaKnown RBP17.59■□□□□ 0.41
CPSF1-206ENST00000531480 BCL11AQ9H165 835 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 RAI14Q9P0K7 980 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 CLEC11AQ9Y240 323 aa17.59■□□□□ 0.41
CPSF1-206ENST00000531480 CDK5RAP2Q96SN8 1893 aa17.58■□□□□ 0.41
CPSF1-206ENST00000531480 FOCADQ5VW36 1801 aa17.58■□□□□ 0.41
CPSF1-206ENST00000531480 GOLIM4O00461 696 aa17.58■□□□□ 0.4
CPSF1-206ENST00000531480 MYO1BO43795 1136 aa17.58■□□□□ 0.4
CPSF1-206ENST00000531480 LDHCP07864 332 aa17.58■□□□□ 0.4
CPSF1-206ENST00000531480 PDE4AP27815 886 aa17.58■□□□□ 0.4
CPSF1-206ENST00000531480 RBM5P52756 815 aaKnown RBP eCLIP17.58■□□□□ 0.4
CPSF1-206ENST00000531480 DCPSQ96C86 337 aaKnown RBP17.58■□□□□ 0.4
CPSF1-206ENST00000531480 EDC3Q96F86 508 aaKnown RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms