RNA–Protein interactions for RNA: ENST00000520580.5

SREK1-208, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 2

Gene SREK1, Length 2,369 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-208	ENST00000520580	ZNF697	Q5TEC3	545 aa		4.93	□□□□□ -1.62
SREK1-208	ENST00000520580	REC114	Q7Z4M0	266 aa		4.93	□□□□□ -1.62
SREK1-208	ENST00000520580	RNF217	Q8TC41	542 aa		4.93	□□□□□ -1.62
SREK1-208	ENST00000520580	THAP3	Q8WTV1	239 aa	Predicted RBP	4.93	□□□□□ -1.62
SREK1-208	ENST00000520580	TSEN34	Q9BSV6	310 aa	Known RBP	4.93	□□□□□ -1.62
SREK1-208	ENST00000520580	ANTXR1	Q9H6X2	564 aa		4.93	□□□□□ -1.62
SREK1-208	ENST00000520580	ATP8A1	Q9Y2Q0	1164 aa		4.93	□□□□□ -1.62
SREK1-208	ENST00000520580	FAM221A	A4D161	298 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	ZNF165	P49910	485 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	SFSWAP	Q12872	951 aa	Known RBP	4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	ZNRF3	Q9ULT6	936 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	EID1	Q9Y6B2	187 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580		A0A096LPE4	126 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580		A0A1W2PPZ6	126 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	DCDC2B	A2VCK2	349 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	MYCLP1	P12525	358 aa	Predicted RBP	4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	BMP2	P12643	396 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	MPP2	Q14168	576 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	CBX2	Q14781	532 aa	Predicted RBP	4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	SPRYD7	Q5W111	196 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	MRM1	Q6IN84	353 aa	Known RBP	4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	LYSMD3	Q7Z3D4	306 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	PNMA5	Q96PV4	448 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	PCDHB14	Q9Y5E9	798 aa		4.92	□□□□□ -1.62
SREK1-208	ENST00000520580	FAM86C2P	A6NEL3	165 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	FIGNL2	A6NMB9	653 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	TNFRSF10A	O00220	468 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	KHNYN	O15037	678 aa	Known RBP	4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	BPNT1	O95861	308 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	NFKB1	P19838	968 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	CCIN	Q13939	588 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	SNIP1	Q8TAD8	396 aa	Known RBP	4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	GAS2L1	Q99501	681 aa	Predicted RBP	4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	GSX2	Q9BZM3	304 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	CBX8	Q9HC52	389 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	ITPKA	P23677	461 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	BRDT	Q58F21	947 aa	Predicted RBP	4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	CT47A1	Q5JQC4	288 aa	Predicted RBP	4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	GRIN3A	Q8TCU5	1115 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	MORC4	Q8TE76	937 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	ZNF576	Q9H609	170 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	PKD2L1	Q9P0L9	805 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	ZMYM5	Q9UJ78	669 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	KCNH4	Q9UQ05	1017 aa		4.91	□□□□□ -1.62
SREK1-208	ENST00000520580	UPP2	O95045	317 aa		4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	PSAP	P07602	524 aa		4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	VIL1	P09327	827 aa	Known RBP	4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	RPS26	P62854	115 aa	Known RBP	4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	MPRIP	Q6WCQ1	1025 aa		4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	HFE2	Q6ZVN8	426 aa		4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	LRRC3	Q9BY71	257 aa		4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	MUC3B	Q9H195	1237 aa		4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	TMEM39A	Q9NV64	488 aa		4.9	□□□□□ -1.62
SREK1-208	ENST00000520580	ROBO2	Q9HCK4	1378 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580		J3QW42	95 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	POU3F3	P20264	500 aa	Predicted RBP	4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	MLLT1	Q03111	559 aa	Predicted RBP	4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	TTC6	Q86TZ1	520 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	FAM178B	Q8IXR5	827 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	CEP120	Q8N960	986 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	HPS1	Q92902	700 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	CCDC136	Q96JN2	1154 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	IGFLR1	Q9H665	355 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	TYW1	Q9NV66	732 aa	Known RBP	4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	TCEAL9	Q9UHQ7	104 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	PCDHB10	Q9UN67	800 aa		4.9	□□□□□ -1.63
SREK1-208	ENST00000520580	PRC1	O43663	620 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	CILP	O75339	1184 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	FAM153B	P0C7A2	387 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	ATP11A	P98196	1134 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	EXOSC10	Q01780	885 aa	Known RBP	4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	PTPN11	Q06124	597 aa	Predicted RBP	4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	DDX42	Q86XP3	938 aa	Known RBP eCLIP	4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	THNSL2	Q86YJ6	484 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	NIM1K	Q8IY84	436 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	STK35	Q8TDR2	534 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	SPOCK3	Q9BQ16	436 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580		A0A1W2PQH9	124 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	NFKBIE	O00221	500 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	PDE8A	O60658	829 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	BMP6	P22004	513 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	CDK8	P49336	464 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	NFKB2	Q00653	900 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	HYAL2	Q12891	473 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	ZYX	Q15942	572 aa	Known RBP	4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	BHMT	Q93088	406 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	NXPE3	Q969Y0	559 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	RASSF4	Q9H2L5	321 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	STRN4	Q9NRL3	753 aa		4.89	□□□□□ -1.63
SREK1-208	ENST00000520580	ALDH1L1	O75891	902 aa		4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	KIF4A	O95239	1232 aa		4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	L1CAM	P32004	1257 aa		4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	STAT3	P40763	770 aa		4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	CASP7	P55210	303 aa		4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	LRRC41	Q15345	812 aa		4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	KRT26	Q7Z3Y9	468 aa		4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	CYP4X1	Q8N118	509 aa		4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	REXO1	Q8N1G1	1221 aa	Known RBP	4.88	□□□□□ -1.63
SREK1-208	ENST00000520580	OR6P1	Q8NGX9	317 aa		4.88	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms