RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 NUP160Q12769 1436 aa8.29□□□□□ -1.08
LIMCH1-207ENST00000508466 RXRAP19793 462 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 EZH2Q15910 746 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 ACCSLQ4AC99 568 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 ILDR1Q86SU0 546 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 ERC1Q8IUD2 1116 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 TMEM139Q8IV31 216 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 FMR1NBQ8N0W7 255 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 MRPS27Q92552 414 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 MYO5CQ9NQX4 1742 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 FAM170AA1A519 330 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 GOLGA6CA6NDK9 693 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 ATP8B1O43520 1251 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 ERLIN1O75477 346 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 GOLGA6DP0CG33 693 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 RPS6KB1P23443 525 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 GPTP24298 496 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 EIF5P55010 431 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 GUCY1A3Q02108 690 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 BRD3Q15059 726 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 MPHOSPH8Q99549 860 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 GOLGA6AQ9NYA3 693 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 IMPACTQ9P2X3 320 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 SETD1BQ9UPS6 1966 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 DISP1Q96F81 1524 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 PTPDC1A2A3K4 754 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 PPP1R12AO14974 1030 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 IL13P35225 146 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 PPARAQ07869 468 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 TBC1D8BQ0IIM8 1120 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 PSMD2Q13200 908 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 TAF7Q15545 349 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 TC2NQ8N9U0 490 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 HDAC7Q8WUI4 952 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 ARL8AQ96BM9 186 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 SLF1Q9BQI6 1058 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 CDK19Q9BWU1 502 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 ACBD3Q9H3P7 528 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 STAP2Q9UGK3 403 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 RPGRIP1LQ68CZ1 1315 aa8.28□□□□□ -1.08
LIMCH1-207ENST00000508466 CFAP65Q6ZU64 1925 aaKnown RBP8.27□□□□□ -1.08
LIMCH1-207ENST00000508466 KDM5AP29375 1690 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CTAGE15A4D2H0 777 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CTAGE8P0CG41 777 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 STIM1Q13586 685 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 SPRED3Q2MJR0 410 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CTAGE6Q86UF2 777 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 IQCA1Q86XH1 822 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CTAGE4Q8IX94 777 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 PROCA1Q8NCQ7 364 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 FAM71BQ8TC56 605 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CABS1Q96KC9 395 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CRACR2AQ9BSW2 395 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 DDX20Q9UHI6 824 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 FAM135BQ49AJ0 1406 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CEP152O94986 1710 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 UBE2Q2LH0YL09 131 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 PES1O00541 588 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 HGSO14964 777 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 NAP1L1P55209 391 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 HSP90AB2PQ58FF8 381 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 THEMIS2Q5TEJ8 643 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 FOXP4Q8IVH2 680 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 SMYD4Q8IYR2 804 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 STAMQ92783 540 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 KCNB2Q92953 911 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 BORCS6Q96GS4 357 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 MMS19Q96T76 1030 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CAPS2Q9BXY5 557 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 RCOR1Q9UKL0 485 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 CDHR2Q9BYE9 1310 aa8.27□□□□□ -1.09
LIMCH1-207ENST00000508466 ARHGAP6O43182 974 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 CTDNEP1O95476 244 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 GBP2P32456 591 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 CCT4P50991 539 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 HAND2P61296 217 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 USP4Q13107 963 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 HDGFL2Q7Z4V5 671 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 FAM76AQ8TAV0 307 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 SPDL1Q96EA4 605 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 EHD2Q9NZN4 543 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 CDC23Q9UJX2 597 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 TRAPPC8Q9Y2L5 1435 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 ITSN2Q9NZM3 1697 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 KIF1CO43896 1103 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 KIF5CO60282 957 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 KIAA0754O94854 1291 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 PFKFB1P16118 471 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 PSME1Q06323 249 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 FMR1Q06787 632 aaKnown RBP eCLIP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 RBL2Q08999 1139 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 SLC39A6Q13433 755 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 NEDD9Q14511 834 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 SND1Q7KZF4 910 aaKnown RBP eCLIP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 VSTM4Q8IW00 320 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 RNF225M0QZC1 329 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 AGPSO00116 658 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 KRT14P02533 472 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 HPDP32754 393 aaPredicted RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms