RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 PPP1R42Q7Z4L9 355 aa15.81■□□□□ 0.12
HDAC1-206ENST00000476391 ZKSCAN4Q969J2 545 aaPredicted RBP15.81■□□□□ 0.12
HDAC1-206ENST00000476391 PTPRMP28827 1452 aa15.81■□□□□ 0.12
HDAC1-206ENST00000476391 CTAGE15A4D2H0 777 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 CTAGE8P0CG41 777 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 MCM3P25205 808 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 MRPL12P52815 198 aaKnown RBP15.8■□□□□ 0.12
HDAC1-206ENST00000476391 CTAGE6Q86UF2 777 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 SPATS2Q86XZ4 545 aaKnown RBP15.8■□□□□ 0.12
HDAC1-206ENST00000476391 CTAGE4Q8IX94 777 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 A0A1B0GVL5 298 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 KLHL33A6NCF5 533 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 KIF5CO60282 957 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 RHOXF2BP0C7M4 288 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 FNTAP49354 379 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 GOLGA8FQ08AF8 430 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 GOLGA8DPQ0D2H9 430 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 WHAMMP3Q1A5X7 153 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 MCM10Q7L590 875 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 FAM76AQ8TAV0 307 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 N4BP2L2Q92802 583 aaPredicted RBP15.8■□□□□ 0.12
HDAC1-206ENST00000476391 RHOXF2Q9BQY4 288 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 CAPN7Q9Y6W3 813 aa15.8■□□□□ 0.12
HDAC1-206ENST00000476391 KRT32Q14532 448 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 KARSQ15046 597 aaKnown RBP15.79■□□□□ 0.12
HDAC1-206ENST00000476391 WLSQ5T9L3 541 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.79■□□□□ 0.12
HDAC1-206ENST00000476391 TC2NQ8N9U0 490 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 CABP1Q9NZU7 370 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 H0YHG0 523 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 SARNPP82979 210 aaKnown RBP15.79■□□□□ 0.12
HDAC1-206ENST00000476391 SF3B2Q13435 895 aaKnown RBP15.79■□□□□ 0.12
HDAC1-206ENST00000476391 SKIDA1Q1XH10 827 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 ARHGEF25Q86VW2 580 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 BCAS4Q8TDM0 211 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 KAT14Q9H8E8 782 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 RTEL1Q9NZ71 1219 aa15.79■□□□□ 0.12
HDAC1-206ENST00000476391 BIN1O00499 593 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 PPFIA1Q13136 1202 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 B4GALNT4Q76KP1 1039 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 GPATCH3Q96I76 525 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 MRPL44Q9H9J2 332 aaKnown RBP15.78■□□□□ 0.12
HDAC1-206ENST00000476391 ECHDC1Q9NTX5 307 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 HPCAL4Q9UM19 191 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 CTAGE9A4FU28 777 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 A6NNZ2 444 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 TMEM232C9JQI7 657 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 NEBLO76041 1014 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 TUBB8Q3ZCM7 444 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 ODF2LQ9ULJ1 636 aa15.78■□□□□ 0.12
HDAC1-206ENST00000476391 MINK1Q8N4C8 1332 aaPredicted RBP15.78■□□□□ 0.12
HDAC1-206ENST00000476391 NUTM2FA1L443 756 aa15.77■□□□□ 0.12
HDAC1-206ENST00000476391 EIF3HO15372 352 aaKnown RBP eCLIP15.77■□□□□ 0.125e-11■■■□□ 14.9
HDAC1-206ENST00000476391 BIRC2Q13490 618 aa15.77■□□□□ 0.12
HDAC1-206ENST00000476391 MTX1Q13505 466 aa15.77■□□□□ 0.12
HDAC1-206ENST00000476391 NUTM2GQ5VZR2 741 aa15.77■□□□□ 0.12
HDAC1-206ENST00000476391 FAM208AQ9UK61 1670 aaKnown RBP15.77■□□□□ 0.12
HDAC1-206ENST00000476391 PIK3C2BO00750 1634 aa15.77■□□□□ 0.12
HDAC1-206ENST00000476391 ZC3H4Q9UPT8 1303 aaKnown RBP15.77■□□□□ 0.12
HDAC1-206ENST00000476391 PFKFB2O60825 505 aa15.77■□□□□ 0.11
HDAC1-206ENST00000476391 AMPHP49418 695 aa15.77■□□□□ 0.11
HDAC1-206ENST00000476391 SPECC1LQ69YQ0 1117 aa15.77■□□□□ 0.11
HDAC1-206ENST00000476391 KCNG4Q8TDN1 519 aa15.77■□□□□ 0.11
HDAC1-206ENST00000476391 IRX2Q9BZI1 471 aaPredicted RBP15.77■□□□□ 0.11
HDAC1-206ENST00000476391 TRIM6Q9C030 488 aaPredicted RBP15.77■□□□□ 0.11
HDAC1-206ENST00000476391 JCADQ9P266 1359 aa15.77■□□□□ 0.11
HDAC1-206ENST00000476391 ZNF202O95125 648 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 ARHGAP25P42331 645 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 CLASRPQ8N2M8 674 aaKnown RBP15.76■□□□□ 0.11
HDAC1-206ENST00000476391 COG1Q8WTW3 980 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 CNKSR2Q8WXI2 1034 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 TUBE1Q9UJT0 475 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 IRF6O14896 467 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 KIAA0754O94854 1291 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 STIM1Q13586 685 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 PDILTQ8N807 584 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 CCDC148Q8NFR7 591 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 DESI2Q9BSY9 194 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 CAPS2Q9BXY5 557 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 INTS13Q9NVM9 706 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 BSDC1Q9NW68 430 aaPredicted RBP15.76■□□□□ 0.11
HDAC1-206ENST00000476391 STK26Q9P289 416 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 SBNO1A3KN83 1393 aa15.76■□□□□ 0.11
HDAC1-206ENST00000476391 NPATQ14207 1427 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 GOLGA6CA6NDK9 693 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 GOLGA6DP0CG33 693 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 NMIQ13287 307 aaPredicted RBP15.75■□□□□ 0.11
HDAC1-206ENST00000476391 YTHDF3Q7Z739 585 aaKnown RBP15.75■□□□□ 0.11
HDAC1-206ENST00000476391 IQCA1Q86XH1 822 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 OTUD6BQ8N6M0 293 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 LINC00301Q8NCQ3 95 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 NSUN7Q8NE18 718 aaKnown RBP15.75■□□□□ 0.11
HDAC1-206ENST00000476391 NAA15Q9BXJ9 866 aaKnown RBP15.75■□□□□ 0.11
HDAC1-206ENST00000476391 CD248Q9HCU0 757 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 GOLGA6AQ9NYA3 693 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 TSPYL4Q9UJ04 414 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 NRKQ7Z2Y5 1582 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 MYO1FO00160 1098 aa15.75■□□□□ 0.11
HDAC1-206ENST00000476391 SF3A1Q15459 793 aaKnown RBP15.75■□□□□ 0.11
HDAC1-206ENST00000476391 ZKSCAN8Q15776 578 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms