RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PRDX5P30044 214 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 HDLBPQ00341 1268 aaKnown RBP14.6□□□□□ -0.07
VPS13D-204ENST00000469054 CFAP100Q494V2 611 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 SPTY2D1Q68D10 685 aaPredicted RBP14.6□□□□□ -0.07
VPS13D-204ENST00000469054 CHADLQ6NUI6 762 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 MTMR14Q8NCE2 650 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 MRIQ9BWK5 157 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 ABCF2Q9UG63 623 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 PGAP2Q9UHJ9 254 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 MAST3O60307 1309 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 ARAP2Q8WZ64 1704 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 ATP5JP18859 108 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 ZAP70P43403 619 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 RBM5P52756 815 aaKnown RBP eCLIP14.59□□□□□ -0.07
VPS13D-204ENST00000469054 FSTL1Q12841 308 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 DLGAP5Q15398 846 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 B4GALNT3Q6L9W6 998 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 TBC1D9Q6ZT07 1266 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 ERICH6Q7L0X2 663 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 ZBED3Q96IU2 234 aaPredicted RBP14.59□□□□□ -0.07
VPS13D-204ENST00000469054 ECHDC1Q9NTX5 307 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 SERPINA10Q9UK55 444 aa14.59□□□□□ -0.07
VPS13D-204ENST00000469054 PSME4Q14997 1843 aa14.58□□□□□ -0.08
VPS13D-204ENST00000469054 CYP2E1P05181 493 aaPredicted RBP14.58□□□□□ -0.08
VPS13D-204ENST00000469054 CRKP46108 304 aa14.58□□□□□ -0.08
VPS13D-204ENST00000469054 NBPF9Q3BBW0 867 aa14.58□□□□□ -0.08
VPS13D-204ENST00000469054 MAP1SQ66K74 1059 aaPredicted RBP14.58□□□□□ -0.08
VPS13D-204ENST00000469054 TEKT1Q969V4 418 aa14.58□□□□□ -0.08
VPS13D-204ENST00000469054 PCDHAC2Q9Y5I4 1007 aa14.58□□□□□ -0.08
VPS13D-204ENST00000469054 SPDYE2BA6NHP3 402 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 SPDYE6P0CI01 402 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 NUCB1Q02818 461 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 HHIPL2Q6UWX4 724 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 CNTROBQ8N137 903 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 OTUD7AQ8TE49 926 aaPredicted RBP14.57□□□□□ -0.08
VPS13D-204ENST00000469054 GPATCH3Q96I76 525 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 PRMT6Q96LA8 375 aaPredicted RBP14.57□□□□□ -0.08
VPS13D-204ENST00000469054 LNPKQ9C0E8 428 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 BOLA2Q9H3K6 86 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 LRP2BPQ9P2M1 347 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 NDUFB9Q9Y6M9 179 aa14.57□□□□□ -0.08
VPS13D-204ENST00000469054 MYO1BO43795 1136 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 IGSF3O75054 1194 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 DIXDC1Q155Q3 683 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 ANGEL2Q5VTE6 544 aaKnown RBP14.56□□□□□ -0.08
VPS13D-204ENST00000469054 CHD1LQ86WJ1 897 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 DZIP1Q86YF9 867 aaKnown RBP14.56□□□□□ -0.08
VPS13D-204ENST00000469054 DCPSQ96C86 337 aaKnown RBP14.56□□□□□ -0.08
VPS13D-204ENST00000469054 ZDHHC15Q96MV8 337 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 DNAJC2Q99543 621 aaKnown RBP14.56□□□□□ -0.08
VPS13D-204ENST00000469054 HAUS7Q99871 368 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 ANTXR1Q9H6X2 564 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 PIH1D3Q9NQM4 214 aaKnown RBP14.56□□□□□ -0.08
VPS13D-204ENST00000469054 GGA3Q9NZ52 723 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 RAI14Q9P0K7 980 aa14.56□□□□□ -0.08
VPS13D-204ENST00000469054 ZNF646O15015 1829 aaPredicted RBP14.56□□□□□ -0.08
VPS13D-204ENST00000469054 ASTN2O75129 1339 aaPredicted RBP14.56□□□□□ -0.08
VPS13D-204ENST00000469054 ITGBL1O95965 494 aaPredicted RBP14.55□□□□□ -0.08
VPS13D-204ENST00000469054 MX1P20591 662 aa14.55□□□□□ -0.08
VPS13D-204ENST00000469054 C1QTNF8P60827 252 aa14.55□□□□□ -0.08
VPS13D-204ENST00000469054 MECOMQ03112 1051 aa14.55□□□□□ -0.08
VPS13D-204ENST00000469054 TTF1Q15361 905 aaPredicted RBP14.55□□□□□ -0.08
VPS13D-204ENST00000469054 APOBEC3HQ6NTF7 200 aaKnown RBP14.55□□□□□ -0.08
VPS13D-204ENST00000469054 CDC37L1Q7L3B6 337 aa14.55□□□□□ -0.08
VPS13D-204ENST00000469054 SLF2Q8IX21 1173 aa14.55□□□□□ -0.08
VPS13D-204ENST00000469054 NSUN4Q96CB9 384 aaKnown RBP14.55□□□□□ -0.08
VPS13D-204ENST00000469054 FAM163AQ96GL9 167 aaPredicted RBP14.55□□□□□ -0.08
VPS13D-204ENST00000469054 TTC41PQ6P2S7 1318 aa14.55□□□□□ -0.08
VPS13D-204ENST00000469054 GOLIM4O00461 696 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 ERC2O15083 957 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 TSHZ3Q63HK5 1081 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 KRT26Q7Z3Y9 468 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 USP48Q86UV5 1035 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 SULF1Q8IWU6 871 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 DAGLAQ9Y4D2 1042 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 SALL3Q9BXA9 1300 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 PITPNM2Q9BZ72 1349 aa14.54□□□□□ -0.08
VPS13D-204ENST00000469054 ADAMTSL1Q8N6G6 1762 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 GAKO14976 1311 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 AOX1Q06278 1338 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 CLRN2A0PK11 232 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 IDH1O75874 414 aaKnown RBP14.53□□□□□ -0.08
VPS13D-204ENST00000469054 GLRX3O76003 335 aaKnown RBP14.53□□□□□ -0.08
VPS13D-204ENST00000469054 LDHCP07864 332 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 GSTO1P78417 241 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 SPDYE2Q495Y8 402 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 ERICH6BQ5W0A0 696 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 ZNF384Q8TF68 577 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 EDC3Q96F86 508 aaKnown RBP14.53□□□□□ -0.08
VPS13D-204ENST00000469054 GLIS2Q9BZE0 524 aaPredicted RBP14.53□□□□□ -0.08
VPS13D-204ENST00000469054 TDRD3Q9H7E2 651 aaKnown RBP14.53□□□□□ -0.08
VPS13D-204ENST00000469054 PAG1Q9NWQ8 432 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 STAP2Q9UGK3 403 aa14.53□□□□□ -0.08
VPS13D-204ENST00000469054 CAPN15O75808 1086 aa14.52□□□□□ -0.09
VPS13D-204ENST00000469054 PDE1AP54750 535 aa14.52□□□□□ -0.09
VPS13D-204ENST00000469054 MAP3K12Q12852 859 aa14.52□□□□□ -0.09
VPS13D-204ENST00000469054 NAA16Q6N069 864 aaPredicted RBP14.52□□□□□ -0.09
VPS13D-204ENST00000469054 APOBEC3FQ8IUX4 373 aaKnown RBP14.52□□□□□ -0.09
VPS13D-204ENST00000469054 PI4K2BQ8TCG2 481 aa14.52□□□□□ -0.09
VPS13D-204ENST00000469054 ZNF70Q9UC06 446 aaPredicted RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms