RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 BSDC1Q9NW68 430 aaPredicted RBP16.06■□□□□ 0.16
CLK3-203ENST00000454830 PDIA3P30101 505 aaKnown RBP16.06■□□□□ 0.16
CLK3-203ENST00000454830 SF3B3Q15393 1217 aaKnown RBP16.06■□□□□ 0.16
CLK3-203ENST00000454830 CNBD1Q8NA66 436 aa16.06■□□□□ 0.16
CLK3-203ENST00000454830 SPATA32Q96LK8 384 aa16.06■□□□□ 0.16
CLK3-203ENST00000454830 STRBPQ96SI9 672 aaKnown RBP16.06■□□□□ 0.16
CLK3-203ENST00000454830 ANKRD36CQ5JPF3 1778 aa16.05■□□□□ 0.16
CLK3-203ENST00000454830 FOXP2O15409 715 aa16.05■□□□□ 0.16
CLK3-203ENST00000454830 MICU3Q86XE3 530 aa16.05■□□□□ 0.16
CLK3-203ENST00000454830 TBC1D10CQ8IV04 446 aa16.05■□□□□ 0.16
CLK3-203ENST00000454830 LCORLQ8N3X6 602 aa16.05■□□□□ 0.16
CLK3-203ENST00000454830 TCHHQ07283 1943 aa16.05■□□□□ 0.16
CLK3-203ENST00000454830 UBE2HP62256 183 aa16.05■□□□□ 0.16
CLK3-203ENST00000454830 IFNL3Q8IZI9 196 aa16.05■□□□□ 0.16
CLK3-203ENST00000454830 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.04■□□□□ 0.16
CLK3-203ENST00000454830 BICD2Q8TD16 824 aa16.04■□□□□ 0.16
CLK3-203ENST00000454830 HMGN5P82970 282 aaKnown RBP16.04■□□□□ 0.16
CLK3-203ENST00000454830 PLCB2Q00722 1185 aa16.04■□□□□ 0.16
CLK3-203ENST00000454830 UBE4AQ14139 1066 aa16.04■□□□□ 0.16
CLK3-203ENST00000454830 NSUN7Q8NE18 718 aaKnown RBP16.04■□□□□ 0.16
CLK3-203ENST00000454830 SDR42E1Q8WUS8 393 aa16.04■□□□□ 0.16
CLK3-203ENST00000454830 KLRK1P26718 216 aa16.04■□□□□ 0.16
CLK3-203ENST00000454830 ZKSCAN3Q9BRR0 538 aa16.04■□□□□ 0.16
CLK3-203ENST00000454830 PATL2C9JE40 543 aaKnown RBP16.03■□□□□ 0.16
CLK3-203ENST00000454830 OTUD7BQ6GQQ9 843 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 IFIT3O14879 490 aaKnown RBP16.03■□□□□ 0.16
CLK3-203ENST00000454830 DHX16O60231 1041 aaKnown RBP16.03■□□□□ 0.16
CLK3-203ENST00000454830 NFIXQ14938 502 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 SLC4A8Q2Y0W8 1093 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 NAA16Q6N069 864 aaPredicted RBP16.03■□□□□ 0.16
CLK3-203ENST00000454830 RPGRQ92834 1020 aaKnown RBP16.03■□□□□ 0.16
CLK3-203ENST00000454830 ZNF445P59923 1031 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 TMEM67Q5HYA8 995 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 MFSD6Q6ZSS7 791 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 MYL10Q9BUA6 226 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 RBSNQ9H1K0 784 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 LRRC4BQ9NT99 713 aa16.03■□□□□ 0.16
CLK3-203ENST00000454830 MAGEB6P1A0A0J9YX57 407 aa16.02■□□□□ 0.16
CLK3-203ENST00000454830 HIBADHP31937 336 aaKnown RBP16.02■□□□□ 0.16
CLK3-203ENST00000454830 ORC3Q9UBD5 711 aaPredicted RBP16.02■□□□□ 0.16
CLK3-203ENST00000454830 LRSAM1Q6UWE0 723 aa16.02■□□□□ 0.15
CLK3-203ENST00000454830 MB21D2Q8IYB1 491 aaPredicted RBP16.02■□□□□ 0.15
CLK3-203ENST00000454830 TSPY26PQ9H489 355 aa16.02■□□□□ 0.15
CLK3-203ENST00000454830 GNL2Q13823 731 aaKnown RBP16.02■□□□□ 0.15
CLK3-203ENST00000454830 KRT27Q7Z3Y8 459 aa16.02■□□□□ 0.15
CLK3-203ENST00000454830 CCDC82Q8N4S0 544 aa16.02■□□□□ 0.15
CLK3-203ENST00000454830 CHMP4CQ96CF2 233 aa16.02■□□□□ 0.15
CLK3-203ENST00000454830 ZNF274Q96GC6 653 aaPredicted RBP16.02■□□□□ 0.15
CLK3-203ENST00000454830 FAM84BQ96KN1 310 aaPredicted RBP16.02■□□□□ 0.15
CLK3-203ENST00000454830 TCRBV5S4A2TA0A5A2 114 aa16.01■□□□□ 0.15
CLK3-203ENST00000454830 PDIA4P13667 645 aaKnown RBP16.01■□□□□ 0.15
CLK3-203ENST00000454830 SYNE3Q6ZMZ3 975 aa16.01■□□□□ 0.15
CLK3-203ENST00000454830 TTC6Q86TZ1 520 aa16.01■□□□□ 0.15
CLK3-203ENST00000454830 CAMK4Q16566 473 aa16.01■□□□□ 0.15
CLK3-203ENST00000454830 CPLX2Q6PUV4 134 aaKnown RBP16.01■□□□□ 0.15
CLK3-203ENST00000454830 LLPHQ9BRT6 129 aaKnown RBP16.01■□□□□ 0.15
CLK3-203ENST00000454830 BCL11BQ9C0K0 894 aaPredicted RBP16.01■□□□□ 0.15
CLK3-203ENST00000454830 ERICH2A1L162 156 aa16.01■□□□□ 0.15
CLK3-203ENST00000454830 METAP2P50579 478 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLK3-203ENST00000454830 ANTXR2P58335 489 aa16.01■□□□□ 0.15
CLK3-203ENST00000454830 CYB5R4Q7L1T6 521 aa16.01■□□□□ 0.15
CLK3-203ENST00000454830 GPR101Q96P66 508 aaPredicted RBP16.01■□□□□ 0.15
CLK3-203ENST00000454830 ANKRD2Q9GZV1 360 aa16.01■□□□□ 0.15
CLK3-203ENST00000454830 EPB41L4AQ9HCS5 686 aaPredicted RBP16.01■□□□□ 0.15
CLK3-203ENST00000454830 ANGEL1Q9UNK9 670 aaKnown RBP16.01■□□□□ 0.15
CLK3-203ENST00000454830 CCDC69A6NI79 296 aa16■□□□□ 0.15
CLK3-203ENST00000454830 DYNLL1P63167 89 aaKnown RBP16■□□□□ 0.15
CLK3-203ENST00000454830 CCDC183Q5T5S1 534 aa16■□□□□ 0.15
CLK3-203ENST00000454830 C8orf76Q96K31 380 aa16■□□□□ 0.15
CLK3-203ENST00000454830 SCAND2PQ9GZW5 306 aaPredicted RBP16■□□□□ 0.15
CLK3-203ENST00000454830 CTDNEP1O95476 244 aa16■□□□□ 0.15
CLK3-203ENST00000454830 NUP133Q8WUM0 1156 aa16■□□□□ 0.15
CLK3-203ENST00000454830 RTL9Q8NET4 1388 aa16■□□□□ 0.15
CLK3-203ENST00000454830 NEDD4P46934 1319 aa16■□□□□ 0.15
CLK3-203ENST00000454830 SLC10A5Q5PT55 438 aa16■□□□□ 0.15
CLK3-203ENST00000454830 GIMAP6Q6P9H5 292 aa16■□□□□ 0.15
CLK3-203ENST00000454830 ZNF804BA4D1E1 1349 aa15.99■□□□□ 0.15
CLK3-203ENST00000454830 GSG1L2A8MUP6 293 aa15.99■□□□□ 0.15
CLK3-203ENST00000454830 POLR3DP05423 398 aaPredicted RBP15.99■□□□□ 0.15
CLK3-203ENST00000454830 ADD1P35611 737 aaKnown RBP15.99■□□□□ 0.15
CLK3-203ENST00000454830 SART3Q15020 963 aaKnown RBP15.99■□□□□ 0.15
CLK3-203ENST00000454830 SLC51AQ86UW1 340 aa15.99■□□□□ 0.15
CLK3-203ENST00000454830 GOLGA8AA7E2F4 631 aa15.99■□□□□ 0.15
CLK3-203ENST00000454830 GNAT2P19087 354 aa15.99■□□□□ 0.15
CLK3-203ENST00000454830 DZIP1Q86YF9 867 aaKnown RBP15.99■□□□□ 0.15
CLK3-203ENST00000454830 SLC12A7Q9Y666 1083 aa15.99■□□□□ 0.15
CLK3-203ENST00000454830 TAF1P21675 1872 aa15.99■□□□□ 0.15
CLK3-203ENST00000454830 GJB4Q9NTQ9 266 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 AATFQ9NY61 560 aaKnown RBP eCLIP15.98■□□□□ 0.15
CLK3-203ENST00000454830 ZBTB43O43298 467 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 PRDM1O75626 825 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 ST5P78524 1137 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 SF3A1Q15459 793 aaKnown RBP15.98■□□□□ 0.15
CLK3-203ENST00000454830 AKNAD1Q5T1N1 836 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 ADGRA1Q86SQ6 560 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 UBAC1Q9BSL1 405 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 NBPF3Q9H094 633 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 SENP2Q9HC62 589 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 SPEF2Q9C093 1822 aa15.98■□□□□ 0.15
CLK3-203ENST00000454830 RANBP6O60518 1105 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 377.8 ms