RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 COL1A1P02452 1464 aaPredicted RBP28.24■■■□□ 2.11
SMARCB1-205ENST00000417137 ITGBL1O95965 494 aaPredicted RBP28.24■■■□□ 2.11
SMARCB1-205ENST00000417137 MCAMP43121 646 aa28.24■■■□□ 2.11
SMARCB1-205ENST00000417137 GRIK5Q16478 980 aa28.24■■■□□ 2.11
SMARCB1-205ENST00000417137 NBPF9Q3BBW0 867 aa28.24■■■□□ 2.11
SMARCB1-205ENST00000417137 TEKT1Q969V4 418 aa28.24■■■□□ 2.11
SMARCB1-205ENST00000417137 SMARCA5O60264 1052 aaPredicted RBP28.23■■■□□ 2.11
SMARCB1-205ENST00000417137 CRKP46108 304 aa28.23■■■□□ 2.11
SMARCB1-205ENST00000417137 KLRG1Q96E93 195 aa28.23■■■□□ 2.11
SMARCB1-205ENST00000417137 ZBED3Q96IU2 234 aaPredicted RBP28.23■■■□□ 2.11
SMARCB1-205ENST00000417137 GGA3Q9NZ52 723 aa28.23■■■□□ 2.11
SMARCB1-205ENST00000417137 ADAMTSL1Q8N6G6 1762 aa28.23■■■□□ 2.11
SMARCB1-205ENST00000417137 ANGEL2Q5VTE6 544 aaKnown RBP28.22■■■□□ 2.11
SMARCB1-205ENST00000417137 ERICH6Q7L0X2 663 aa28.22■■■□□ 2.11
SMARCB1-205ENST00000417137 SULF1Q8IWU6 871 aa28.22■■■□□ 2.11
SMARCB1-205ENST00000417137 PITPNM2Q9BZ72 1349 aa28.21■■■□□ 2.11
SMARCB1-205ENST00000417137 SPDYE2BA6NHP3 402 aa28.21■■■□□ 2.11
SMARCB1-205ENST00000417137 SPDYE6P0CI01 402 aa28.21■■■□□ 2.11
SMARCB1-205ENST00000417137 PRDX5P30044 214 aa28.21■■■□□ 2.11
SMARCB1-205ENST00000417137 HHIPL2Q6UWX4 724 aa28.21■■■□□ 2.11
SMARCB1-205ENST00000417137 KRT26Q7Z3Y9 468 aa28.21■■■□□ 2.11
SMARCB1-205ENST00000417137 SLF2Q8IX21 1173 aa28.21■■■□□ 2.11
SMARCB1-205ENST00000417137 SNRKQ9NRH2 765 aa28.21■■■□□ 2.11
SMARCB1-205ENST00000417137 PI16Q6UXB8 463 aa28.2■■■□□ 2.1
SMARCB1-205ENST00000417137 PRMT6Q96LA8 375 aaPredicted RBP28.2■■■□□ 2.1
SMARCB1-205ENST00000417137 USP48Q86UV5 1035 aa28.19■■■□□ 2.1
SMARCB1-205ENST00000417137 DZIP1Q86YF9 867 aaKnown RBP28.19■■■□□ 2.1
SMARCB1-205ENST00000417137 JMYQ8N9B5 988 aa28.19■■■□□ 2.1
SMARCB1-205ENST00000417137 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.19■■■□□ 2.1
SMARCB1-205ENST00000417137 GLIS2Q9BZE0 524 aaPredicted RBP28.19■■■□□ 2.1
SMARCB1-205ENST00000417137 LRP2BPQ9P2M1 347 aa28.19■■■□□ 2.1
SMARCB1-205ENST00000417137 ASTN2O75129 1339 aaPredicted RBP28.18■■■□□ 2.1
SMARCB1-205ENST00000417137 PASKQ96RG2 1323 aa28.18■■■□□ 2.1
SMARCB1-205ENST00000417137 IGSF3O75054 1194 aa28.18■■■□□ 2.1
SMARCB1-205ENST00000417137 ANKRD45Q5TZF3 282 aa28.18■■■□□ 2.1
SMARCB1-205ENST00000417137 GPATCH3Q96I76 525 aa28.18■■■□□ 2.1
SMARCB1-205ENST00000417137 ZDHHC15Q96MV8 337 aa28.18■■■□□ 2.1
SMARCB1-205ENST00000417137 ZAP70P43403 619 aa28.17■■■□□ 2.1
SMARCB1-205ENST00000417137 TBC1D9Q6ZT07 1266 aa28.17■■■□□ 2.1
SMARCB1-205ENST00000417137 APOBEC3FQ8IUX4 373 aaKnown RBP28.17■■■□□ 2.1
SMARCB1-205ENST00000417137 GSTO1P78417 241 aa28.16■■■□□ 2.1
SMARCB1-205ENST00000417137 RAI14Q9P0K7 980 aa28.16■■■□□ 2.1
SMARCB1-205ENST00000417137 PCDHAC2Q9Y5I4 1007 aa28.16■■■□□ 2.1
SMARCB1-205ENST00000417137 MYH13Q9UKX3 1938 aa28.16■■■□□ 2.1
SMARCB1-205ENST00000417137 IGHDP01880 384 aa28.15■■■□□ 2.1
SMARCB1-205ENST00000417137 CYP2E1P05181 493 aaPredicted RBP28.15■■■□□ 2.1
SMARCB1-205ENST00000417137 LDHCP07864 332 aa28.15■■■□□ 2.1
SMARCB1-205ENST00000417137 ATP5JP18859 108 aa28.15■■■□□ 2.1
SMARCB1-205ENST00000417137 TRAF5O00463 557 aa28.14■■■□□ 2.1
SMARCB1-205ENST00000417137 HTRA3P83110 453 aa28.14■■■□□ 2.1
SMARCB1-205ENST00000417137 TTF1Q15361 905 aaPredicted RBP28.14■■■□□ 2.1
SMARCB1-205ENST00000417137 SMC5Q8IY18 1101 aa28.14■■■□□ 2.1
SMARCB1-205ENST00000417137 ECHDC1Q9NTX5 307 aa28.14■■■□□ 2.1
SMARCB1-205ENST00000417137 MECOMQ03112 1051 aa28.13■■■□□ 2.09
SMARCB1-205ENST00000417137 DIXDC1Q155Q3 683 aa28.13■■■□□ 2.09
SMARCB1-205ENST00000417137 FAM163AQ96GL9 167 aaPredicted RBP28.13■■■□□ 2.09
SMARCB1-205ENST00000417137 TDRD3Q9H7E2 651 aaKnown RBP28.13■■■□□ 2.09
SMARCB1-205ENST00000417137 ZNF70Q9UC06 446 aaPredicted RBP28.13■■■□□ 2.09
SMARCB1-205ENST00000417137 CLRN2A0PK11 232 aa28.12■■■□□ 2.09
SMARCB1-205ENST00000417137 ADM5C9JUS6 153 aa28.12■■■□□ 2.09
SMARCB1-205ENST00000417137 TNFAIP1Q13829 316 aa28.12■■■□□ 2.09
SMARCB1-205ENST00000417137 SPDYE2Q495Y8 402 aa28.12■■■□□ 2.09
SMARCB1-205ENST00000417137 APOBEC3HQ6NTF7 200 aaKnown RBP28.12■■■□□ 2.09
SMARCB1-205ENST00000417137 VEZTQ9HBM0 779 aa28.12■■■□□ 2.09
SMARCB1-205ENST00000417137 TMOD2Q9NZR1 351 aa28.12■■■□□ 2.09
SMARCB1-205ENST00000417137 DAGLAQ9Y4D2 1042 aa28.12■■■□□ 2.09
SMARCB1-205ENST00000417137 TMEM88BA6NKF7 163 aa28.11■■■□□ 2.09
SMARCB1-205ENST00000417137 NEFLP07196 543 aa28.11■■■□□ 2.09
SMARCB1-205ENST00000417137 NSUN4Q96CB9 384 aaKnown RBP28.11■■■□□ 2.09
SMARCB1-205ENST00000417137 BOLA2Q9H3K6 86 aa28.11■■■□□ 2.09
SMARCB1-205ENST00000417137 DNAJC2Q99543 621 aaKnown RBP28.1■■■□□ 2.09
SMARCB1-205ENST00000417137 PIH1D3Q9NQM4 214 aaKnown RBP28.1■■■□□ 2.09
SMARCB1-205ENST00000417137 PPP2R3BQ9Y5P8 575 aa28.1■■■□□ 2.09
SMARCB1-205ENST00000417137 CELF2O95319 508 aaKnown RBP28.09■■■□□ 2.09
SMARCB1-205ENST00000417137 MAP3K12Q12852 859 aa28.09■■■□□ 2.09
SMARCB1-205ENST00000417137 TMED8Q6PL24 325 aaPredicted RBP28.09■■■□□ 2.09
SMARCB1-205ENST00000417137 DEFB129Q9H1M3 183 aa28.09■■■□□ 2.09
SMARCB1-205ENST00000417137 CREBZFQ9NS37 354 aa28.09■■■□□ 2.09
SMARCB1-205ENST00000417137 ERC2O15083 957 aa28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 IDH1O75874 414 aaKnown RBP28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 TNNI2P48788 182 aa28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 FMR1Q06787 632 aaKnown RBP eCLIP28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 B4GALNT3Q6L9W6 998 aa28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 NAA16Q6N069 864 aaPredicted RBP28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 HAUS7Q99871 368 aa28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 ZNF408Q9H9D4 720 aa28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 NDUFB9Q9Y6M9 179 aa28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 GAKO14976 1311 aa28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 TTC41PQ6P2S7 1318 aa28.08■■■□□ 2.09
SMARCB1-205ENST00000417137 CDCA5Q96FF9 252 aa28.07■■■□□ 2.08
SMARCB1-205ENST00000417137 NOL10Q9BSC4 688 aaKnown RBP28.07■■■□□ 2.08
SMARCB1-205ENST00000417137 ANTXR1Q9H6X2 564 aa28.07■■■□□ 2.08
SMARCB1-205ENST00000417137 SCAF8Q9UPN6 1271 aaKnown RBP28.07■■■□□ 2.08
SMARCB1-205ENST00000417137 MROH7-TTC4A0A0A0MT08 1334 aa28.07■■■□□ 2.08
SMARCB1-205ENST00000417137 GOLIM4O00461 696 aa28.06■■■□□ 2.08
SMARCB1-205ENST00000417137 NF2P35240 595 aa28.06■■■□□ 2.08
SMARCB1-205ENST00000417137 FKBP1CQ5VVH2 108 aa28.06■■■□□ 2.08
SMARCB1-205ENST00000417137 CST9Q5W186 159 aa28.06■■■□□ 2.08
SMARCB1-205ENST00000417137 USP40Q9NVE5 1235 aa28.06■■■□□ 2.08
SMARCB1-205ENST00000417137 PAG1Q9NWQ8 432 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms